RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 RBBP8NLQ8NC74 664 aaPredicted RBP23.17■■□□□ 1.3
SNX1-210ENST00000560260 C2orf15Q8WU43 125 aaKnown RBP23.17■■□□□ 1.3
SNX1-210ENST00000560260 TMEM176AQ96HP8 235 aa23.17■■□□□ 1.3
SNX1-210ENST00000560260 SFXN1Q9H9B4 322 aa23.17■■□□□ 1.3
SNX1-210ENST00000560260 C2orf16Q68DN1 1984 aa23.16■■□□□ 1.3
SNX1-210ENST00000560260 SRGAP2BP0DMP2 458 aa23.16■■□□□ 1.3
SNX1-210ENST00000560260 ATF6P18850 670 aa23.16■■□□□ 1.3
SNX1-210ENST00000560260 ELF1P32519 619 aa23.16■■□□□ 1.3
SNX1-210ENST00000560260 PBX1P40424 430 aa23.16■■□□□ 1.3
SNX1-210ENST00000560260 MFAP3P55082 362 aa23.16■■□□□ 1.3
SNX1-210ENST00000560260 UBASH3AP57075 661 aa23.16■■□□□ 1.3
SNX1-210ENST00000560260 SMARCB1Q12824 385 aa23.16■■□□□ 1.3
SNX1-210ENST00000560260 CFAP221Q4G0U5 840 aa23.16■■□□□ 1.3
SNX1-210ENST00000560260 TMC5Q6UXY8 1006 aa23.16■■□□□ 1.3
SNX1-210ENST00000560260 ENOSF1Q7L5Y1 443 aa23.16■■□□□ 1.3
SNX1-210ENST00000560260 FAM35AQ86V20 835 aa23.16■■□□□ 1.3
SNX1-210ENST00000560260 SPATA2LQ8IUW3 424 aaPredicted RBP23.16■■□□□ 1.3
SNX1-210ENST00000560260 HLA-CQ95604 372 aa23.16■■□□□ 1.3
SNX1-210ENST00000560260 SEPT5Q99719 369 aaPredicted RBP23.16■■□□□ 1.3
SNX1-210ENST00000560260 XPO4Q9C0E2 1151 aaKnown RBP23.16■■□□□ 1.3
SNX1-210ENST00000560260 S1PR5Q9H228 398 aa23.16■■□□□ 1.3
SNX1-210ENST00000560260 ABCB6Q9NP58 842 aa23.16■■□□□ 1.3
SNX1-210ENST00000560260 MAFFQ9ULX9 164 aa23.16■■□□□ 1.3
SNX1-210ENST00000560260 CCL16O15467 120 aa23.15■■□□□ 1.3
SNX1-210ENST00000560260 BDNFP23560 247 aa23.15■■□□□ 1.3
SNX1-210ENST00000560260 TWF1Q12792 350 aa23.15■■□□□ 1.3
SNX1-210ENST00000560260 MAPRE1Q15691 268 aaKnown RBP23.15■■□□□ 1.3
SNX1-210ENST00000560260 PPM1LQ5SGD2 360 aa23.15■■□□□ 1.3
SNX1-210ENST00000560260 C4orf50Q6ZRC1 276 aa23.15■■□□□ 1.3
SNX1-210ENST00000560260 CCDC149Q6ZUS6 474 aa23.15■■□□□ 1.3
SNX1-210ENST00000560260 STKLD1Q8NE28 680 aa23.15■■□□□ 1.3
SNX1-210ENST00000560260 CMASQ8NFW8 434 aaPredicted RBP23.15■■□□□ 1.3
SNX1-210ENST00000560260 SLC2A14Q8TDB8 520 aa23.15■■□□□ 1.3
SNX1-210ENST00000560260 JAKMIP2Q96AA8 810 aa23.15■■□□□ 1.3
SNX1-210ENST00000560260 FUBP3Q96I24 572 aaKnown RBP eCLIP23.15■■□□□ 1.3
SNX1-210ENST00000560260 ZSWIM1Q9BR11 485 aa23.15■■□□□ 1.3
SNX1-210ENST00000560260 ZDHHC7Q9NXF8 308 aa23.15■■□□□ 1.3
SNX1-210ENST00000560260 HSFX1Q9UBD0 423 aa23.15■■□□□ 1.3
SNX1-210ENST00000560260 A0A1W2PQC6 194 aa23.14■■□□□ 1.3
SNX1-210ENST00000560260 KRT5P13647 590 aa23.14■■□□□ 1.3
SNX1-210ENST00000560260 HOXB8P17481 243 aaPredicted RBP23.14■■□□□ 1.3
SNX1-210ENST00000560260 HOXA9P31269 272 aa23.14■■□□□ 1.3
SNX1-210ENST00000560260 POLR2FP61218 127 aaKnown RBP23.14■■□□□ 1.3
SNX1-210ENST00000560260 TFF2Q03403 129 aa23.14■■□□□ 1.3
SNX1-210ENST00000560260 RAPGEF1Q13905 1077 aa23.14■■□□□ 1.3
SNX1-210ENST00000560260 DRAP1Q14919 205 aaPredicted RBP23.14■■□□□ 1.3
SNX1-210ENST00000560260 UVSSAQ2YD98 709 aa23.14■■□□□ 1.3
SNX1-210ENST00000560260 MGAT5BQ3V5L5 792 aa23.14■■□□□ 1.3
SNX1-210ENST00000560260 SDHAF4Q5VUM1 108 aa23.14■■□□□ 1.3
SNX1-210ENST00000560260 SMRP1Q8NCR6 262 aa23.14■■□□□ 1.3
SNX1-210ENST00000560260 TFAP2BQ92481 460 aa23.14■■□□□ 1.3
SNX1-210ENST00000560260 FAM81BQ96LP2 452 aa23.14■■□□□ 1.3
SNX1-210ENST00000560260 PCMTD1Q96MG8 357 aaPredicted RBP23.14■■□□□ 1.3
SNX1-210ENST00000560260 ACP6Q9NPH0 428 aa23.14■■□□□ 1.3
SNX1-210ENST00000560260 DPP7Q9UHL4 492 aa23.14■■□□□ 1.3
SNX1-210ENST00000560260 CD207Q9UJ71 328 aa23.14■■□□□ 1.3
SNX1-210ENST00000560260 COG5Q9UP83 839 aa23.14■■□□□ 1.3
SNX1-210ENST00000560260 CCDC195A0A1B0GUA6 201 aa23.13■■□□□ 1.29
SNX1-210ENST00000560260 GRXCR2A6NFK2 248 aa23.13■■□□□ 1.29
SNX1-210ENST00000560260 SPDYE4A6NLX3 237 aa23.13■■□□□ 1.29
SNX1-210ENST00000560260 FOXN3O00409 490 aaPredicted RBP23.13■■□□□ 1.29
SNX1-210ENST00000560260 RFX1P22670 979 aa23.13■■□□□ 1.29
SNX1-210ENST00000560260 ADORA2BP29275 332 aa23.13■■□□□ 1.29
SNX1-210ENST00000560260 MAGEA11P43364 429 aa23.13■■□□□ 1.29
SNX1-210ENST00000560260 PPP1R26Q5T8A7 1209 aaPredicted RBP23.13■■□□□ 1.29
SNX1-210ENST00000560260 NEK11Q8NG66 645 aa23.13■■□□□ 1.29
SNX1-210ENST00000560260 CYFIP2Q96F07 1278 aa23.13■■□□□ 1.29
SNX1-210ENST00000560260 HEXIM2Q96MH2 286 aaKnown RBP23.13■■□□□ 1.29
SNX1-210ENST00000560260 PRKD2Q9BZL6 878 aa23.13■■□□□ 1.29
SNX1-210ENST00000560260 NLRC4Q9NPP4 1024 aa23.13■■□□□ 1.29
SNX1-210ENST00000560260 CEP72Q9P209 647 aa23.13■■□□□ 1.29
SNX1-210ENST00000560260 PAEPP09466 180 aa23.12■■□□□ 1.29
SNX1-210ENST00000560260 HNRNPA1P09651 372 aaKnown RBP eCLIP23.12■■□□□ 1.29
SNX1-210ENST00000560260 BRD2P25440 801 aaKnown RBP23.12■■□□□ 1.29
SNX1-210ENST00000560260 JAM2P57087 298 aa23.12■■□□□ 1.29
SNX1-210ENST00000560260 ARHGAP17Q68EM7 881 aa23.12■■□□□ 1.29
SNX1-210ENST00000560260 ELMSAN1Q6PJG2 1045 aa23.12■■□□□ 1.29
SNX1-210ENST00000560260 GPR149Q86SP6 731 aa23.12■■□□□ 1.29
SNX1-210ENST00000560260 HNRNPABQ99729 332 aaKnown RBP23.12■■□□□ 1.29
SNX1-210ENST00000560260 ANP32EQ9BTT0 268 aa23.12■■□□□ 1.29
SNX1-210ENST00000560260 MED10Q9BTT4 135 aa23.12■■□□□ 1.29
SNX1-210ENST00000560260 KRT82Q9NSB4 513 aa23.12■■□□□ 1.29
SNX1-210ENST00000560260 DOCK6Q96HP0 2047 aa23.11■■□□□ 1.29
SNX1-210ENST00000560260 F8VZ95 297 aa23.11■■□□□ 1.29
SNX1-210ENST00000560260 LRG1P02750 347 aa23.11■■□□□ 1.29
SNX1-210ENST00000560260 POU2F2P09086 479 aa23.11■■□□□ 1.29
SNX1-210ENST00000560260 CD19P15391 556 aa23.11■■□□□ 1.29
SNX1-210ENST00000560260 DDR2Q16832 855 aa23.11■■□□□ 1.29
SNX1-210ENST00000560260 LEXMQ3ZCV2 418 aa23.11■■□□□ 1.29
SNX1-210ENST00000560260 SARM1Q6SZW1 724 aa23.11■■□□□ 1.29
SNX1-210ENST00000560260 RTL10Q7L3V2 364 aa23.11■■□□□ 1.29
SNX1-210ENST00000560260 GPIHBP1Q8IV16 184 aa23.11■■□□□ 1.29
SNX1-210ENST00000560260 FAM71AQ8IYT1 594 aa23.11■■□□□ 1.29
SNX1-210ENST00000560260 ZMIZ2Q8NF64 920 aa23.11■■□□□ 1.29
SNX1-210ENST00000560260 GADD45GIP1Q8TAE8 222 aaPredicted RBP23.11■■□□□ 1.29
SNX1-210ENST00000560260 GPR152Q8TDT2 470 aa23.11■■□□□ 1.29
SNX1-210ENST00000560260 SMOQ99835 787 aa23.11■■□□□ 1.29
SNX1-210ENST00000560260 TTYH3Q9C0H2 523 aa23.11■■□□□ 1.29
SNX1-210ENST00000560260 ADAM7Q9H2U9 754 aa23.11■■□□□ 1.29
SNX1-210ENST00000560260 HCFC1R1Q9NWW0 138 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms