RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 ALG1L2C9J202 215 aa5.85□□□□□ -1.47
VPS13C-208ENST00000559119 KCNAB3O43448 404 aa5.85□□□□□ -1.47
VPS13C-208ENST00000559119 ZRANB2O95218 330 aaKnown RBP eCLIP5.85□□□□□ -1.47
VPS13C-208ENST00000559119 FESP07332 822 aa5.85□□□□□ -1.47
VPS13C-208ENST00000559119 TYRP14679 529 aa5.85□□□□□ -1.47
VPS13C-208ENST00000559119 PLCD1P51178 756 aa5.85□□□□□ -1.47
VPS13C-208ENST00000559119 GTF2H3Q13889 308 aa5.85□□□□□ -1.47
VPS13C-208ENST00000559119 IQCB1Q15051 598 aa5.85□□□□□ -1.47
VPS13C-208ENST00000559119 AMOTQ4VCS5 1084 aa5.85□□□□□ -1.47
VPS13C-208ENST00000559119 CCDC157Q569K6 752 aa5.85□□□□□ -1.47
VPS13C-208ENST00000559119 PARS2Q7L3T8 475 aaKnown RBP5.85□□□□□ -1.47
VPS13C-208ENST00000559119 CHSY1Q86X52 802 aa5.85□□□□□ -1.47
VPS13C-208ENST00000559119 PCSK9Q8NBP7 692 aaKnown RBP5.85□□□□□ -1.47
VPS13C-208ENST00000559119 ASB2Q96Q27 587 aa5.85□□□□□ -1.47
VPS13C-208ENST00000559119 PTDSS2Q9BVG9 487 aa5.85□□□□□ -1.47
VPS13C-208ENST00000559119 PRSS22Q9GZN4 317 aa5.85□□□□□ -1.47
VPS13C-208ENST00000559119 PNPOQ9NVS9 261 aa5.85□□□□□ -1.47
VPS13C-208ENST00000559119 ELOVL5Q9NYP7 299 aa5.85□□□□□ -1.47
VPS13C-208ENST00000559119 ADAMTS5Q9UNA0 930 aa5.85□□□□□ -1.47
VPS13C-208ENST00000559119 SMIM35A0A1B0GVV1 85 aa5.84□□□□□ -1.47
VPS13C-208ENST00000559119 DCLK1O15075 740 aa5.84□□□□□ -1.47
VPS13C-208ENST00000559119 HOXB6P17509 224 aaKnown RBP5.84□□□□□ -1.47
VPS13C-208ENST00000559119 PPIFP30405 207 aaKnown RBP5.84□□□□□ -1.47
VPS13C-208ENST00000559119 RECQLP46063 649 aaPredicted RBP5.84□□□□□ -1.47
VPS13C-208ENST00000559119 MAP2K6P52564 334 aa5.84□□□□□ -1.47
VPS13C-208ENST00000559119 LILRA4P59901 499 aa5.84□□□□□ -1.47
VPS13C-208ENST00000559119 SP2Q02086 613 aa5.84□□□□□ -1.47
VPS13C-208ENST00000559119 EXOSC9Q06265 439 aaKnown RBP5.84□□□□□ -1.47
VPS13C-208ENST00000559119 TRIM72Q6ZMU5 477 aa5.84□□□□□ -1.47
VPS13C-208ENST00000559119 USP45Q70EL2 814 aa5.84□□□□□ -1.47
VPS13C-208ENST00000559119 GALNT16Q8N428 558 aa5.84□□□□□ -1.47
VPS13C-208ENST00000559119 RP9Q8TA86 221 aaKnown RBP5.84□□□□□ -1.47
VPS13C-208ENST00000559119 CYP2W1Q8TAV3 490 aa5.84□□□□□ -1.47
VPS13C-208ENST00000559119 BRIX1Q8TDN6 353 aaKnown RBP5.84□□□□□ -1.47
VPS13C-208ENST00000559119 ATG4AQ8WYN0 398 aa5.84□□□□□ -1.47
VPS13C-208ENST00000559119 DAZAP1Q96EP5 407 aaKnown RBP5.84□□□□□ -1.47
VPS13C-208ENST00000559119 C5orf34Q96MH7 638 aa5.84□□□□□ -1.47
VPS13C-208ENST00000559119 FSD1LQ9BXM9 530 aa5.84□□□□□ -1.47
VPS13C-208ENST00000559119 VPS16Q9H269 839 aa5.84□□□□□ -1.47
VPS13C-208ENST00000559119 TUBA8Q9NY65 449 aaPredicted RBP5.84□□□□□ -1.47
VPS13C-208ENST00000559119 ADAMTS3O15072 1205 aa5.83□□□□□ -1.48
VPS13C-208ENST00000559119 SNUPNO95149 360 aaKnown RBP5.83□□□□□ -1.48
VPS13C-208ENST00000559119 TOP3BO95985 862 aaKnown RBP5.83□□□□□ -1.48
VPS13C-208ENST00000559119 ARHGAP25P42331 645 aa5.83□□□□□ -1.48
VPS13C-208ENST00000559119 E2F2Q14209 437 aa5.83□□□□□ -1.48
VPS13C-208ENST00000559119 TBC1D25Q3MII6 688 aa5.83□□□□□ -1.48
VPS13C-208ENST00000559119 PXDC1Q5TGL8 231 aa5.83□□□□□ -1.48
VPS13C-208ENST00000559119 MIS18BP1Q6P0N0 1132 aa5.83□□□□□ -1.48
VPS13C-208ENST00000559119 PRR18Q8N4B5 295 aa5.83□□□□□ -1.48
VPS13C-208ENST00000559119 PRPF38AQ8NAV1 312 aaKnown RBP5.83□□□□□ -1.48
VPS13C-208ENST00000559119 XAGE5Q8WWM1 108 aa5.83□□□□□ -1.48
VPS13C-208ENST00000559119 GLG1Q92896 1179 aa5.83□□□□□ -1.48
VPS13C-208ENST00000559119 R3HDM4Q96D70 268 aa5.83□□□□□ -1.48
VPS13C-208ENST00000559119 MOGAT1Q96PD6 335 aa5.83□□□□□ -1.48
VPS13C-208ENST00000559119 SMAD5Q99717 465 aaKnown RBP5.83□□□□□ -1.48
VPS13C-208ENST00000559119 MACROD1Q9BQ69 325 aa5.83□□□□□ -1.48
VPS13C-208ENST00000559119 KRTAP1-5Q9BYS1 174 aa5.83□□□□□ -1.48
VPS13C-208ENST00000559119 SPRTNQ9H040 489 aaPredicted RBP5.83□□□□□ -1.48
VPS13C-208ENST00000559119 SSX2IPQ9Y2D8 614 aa5.83□□□□□ -1.48
VPS13C-208ENST00000559119 SPEF1Q9Y4P9 236 aa5.83□□□□□ -1.48
VPS13C-208ENST00000559119 CYP2D7A0A087X1C5 515 aa5.82□□□□□ -1.48
VPS13C-208ENST00000559119 A1L4Q6 167 aa5.82□□□□□ -1.48
VPS13C-208ENST00000559119 H3BUI4 141 aa5.82□□□□□ -1.48
VPS13C-208ENST00000559119 TRIM38O00635 465 aa5.82□□□□□ -1.48
VPS13C-208ENST00000559119 SFPQP23246 707 aaKnown RBP eCLIP5.82□□□□□ -1.48
VPS13C-208ENST00000559119 KCNJ5P48544 419 aa5.82□□□□□ -1.48
VPS13C-208ENST00000559119 TPTEP56180 551 aa5.82□□□□□ -1.48
VPS13C-208ENST00000559119 GPSM2P81274 684 aa5.82□□□□□ -1.48
VPS13C-208ENST00000559119 SATB1Q01826 763 aa5.82□□□□□ -1.48
VPS13C-208ENST00000559119 FHL1Q13642 323 aa5.82□□□□□ -1.48
VPS13C-208ENST00000559119 RGS7BPQ6MZT1 257 aaPredicted RBP5.82□□□□□ -1.48
VPS13C-208ENST00000559119 ABHD11Q8NFV4 315 aa5.82□□□□□ -1.48
VPS13C-208ENST00000559119 HMCESQ96FZ2 354 aa5.82□□□□□ -1.48
VPS13C-208ENST00000559119 UNC5CO95185 931 aa5.81□□□□□ -1.48
VPS13C-208ENST00000559119 HDCP19113 662 aa5.81□□□□□ -1.48
VPS13C-208ENST00000559119 RABEP1Q15276 862 aa5.81□□□□□ -1.48
VPS13C-208ENST00000559119 TRIP6Q15654 476 aaKnown RBP5.81□□□□□ -1.48
VPS13C-208ENST00000559119 PGS1Q32NB8 556 aa5.81□□□□□ -1.48
VPS13C-208ENST00000559119 CERKLQ49MI3 558 aaPredicted RBP5.81□□□□□ -1.48
VPS13C-208ENST00000559119 EMC10Q5UCC4 262 aa5.81□□□□□ -1.48
VPS13C-208ENST00000559119 Q6ZWC4 215 aa5.81□□□□□ -1.48
VPS13C-208ENST00000559119 C8orf58Q8NAV2 365 aa5.81□□□□□ -1.48
VPS13C-208ENST00000559119 PRSS3P2Q8NHM4 247 aa5.81□□□□□ -1.48
VPS13C-208ENST00000559119 CAMKK2Q96RR4 588 aa5.81□□□□□ -1.48
VPS13C-208ENST00000559119 PDGFCQ9NRA1 345 aa5.81□□□□□ -1.48
VPS13C-208ENST00000559119 PLEKHM1Q9Y4G2 1056 aa5.81□□□□□ -1.48
VPS13C-208ENST00000559119 WDR17Q8IZU2 1322 aa5.8□□□□□ -1.48
VPS13C-208ENST00000559119 WASHC2CQ9Y4E1 1318 aa5.8□□□□□ -1.48
VPS13C-208ENST00000559119 H7C1Q1 480 aa5.8□□□□□ -1.48
VPS13C-208ENST00000559119 GRPP07492 148 aa5.8□□□□□ -1.48
VPS13C-208ENST00000559119 POU2F2P09086 479 aa5.8□□□□□ -1.48
VPS13C-208ENST00000559119 DLDP09622 509 aaKnown RBP5.8□□□□□ -1.48
VPS13C-208ENST00000559119 NR4A2P43354 598 aa5.8□□□□□ -1.48
VPS13C-208ENST00000559119 POLGP54098 1239 aaPredicted RBP5.8□□□□□ -1.48
VPS13C-208ENST00000559119 SOX8P57073 446 aa5.8□□□□□ -1.48
VPS13C-208ENST00000559119 EVA1CP58658 441 aa5.8□□□□□ -1.48
VPS13C-208ENST00000559119 LAMB3Q13751 1172 aa5.8□□□□□ -1.48
VPS13C-208ENST00000559119 DAZAP2Q15038 168 aaPredicted RBP5.8□□□□□ -1.48
VPS13C-208ENST00000559119 AWAT2Q6E213 333 aa5.8□□□□□ -1.48
VPS13C-208ENST00000559119 TECPR1Q7Z6L1 1165 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms