RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 MDM1Q8TC05 714 aa7.66□□□□□ -1.18
VPS13C-206ENST00000558338 NLRP4Q96MN2 994 aa7.66□□□□□ -1.18
VPS13C-206ENST00000558338 HERPUD2Q9BSE4 406 aa7.66□□□□□ -1.18
VPS13C-206ENST00000558338 DDX23Q9BUQ8 820 aaKnown RBP7.66□□□□□ -1.18
VPS13C-206ENST00000558338 INO80BQ9C086 356 aaPredicted RBP7.66□□□□□ -1.18
VPS13C-206ENST00000558338 XYLT2Q9H1B5 865 aa7.66□□□□□ -1.18
VPS13C-206ENST00000558338 CDT1Q9H211 546 aa7.66□□□□□ -1.18
VPS13C-206ENST00000558338 ASB7Q9H672 318 aa7.66□□□□□ -1.18
VPS13C-206ENST00000558338 ELP3Q9H9T3 547 aa7.66□□□□□ -1.18
VPS13C-206ENST00000558338 UBN1Q9NPG3 1134 aa7.66□□□□□ -1.18
VPS13C-206ENST00000558338 NKIRAS1Q9NYS0 192 aa7.66□□□□□ -1.18
VPS13C-206ENST00000558338 SENP1Q9P0U3 644 aa7.66□□□□□ -1.18
VPS13C-206ENST00000558338 PNMA3Q9UL41 463 aa7.66□□□□□ -1.18
VPS13C-206ENST00000558338 TPX2Q9ULW0 747 aaKnown RBP7.66□□□□□ -1.18
VPS13C-206ENST00000558338 ZNF148Q9UQR1 794 aa7.66□□□□□ -1.18
VPS13C-206ENST00000558338 POLR2AP24928 1970 aaKnown RBP7.66□□□□□ -1.18
VPS13C-206ENST00000558338 SIGLEC16A6NMB1 481 aa7.65□□□□□ -1.18
VPS13C-206ENST00000558338 ARIH2O95376 493 aa7.65□□□□□ -1.18
VPS13C-206ENST00000558338 CD19P15391 556 aa7.65□□□□□ -1.18
VPS13C-206ENST00000558338 PSMA2P25787 234 aa7.65□□□□□ -1.18
VPS13C-206ENST00000558338 MAGEA4P43358 317 aa7.65□□□□□ -1.18
VPS13C-206ENST00000558338 VPS41P49754 854 aa7.65□□□□□ -1.18
VPS13C-206ENST00000558338 RPL7AP62424 266 aaKnown RBP7.65□□□□□ -1.18
VPS13C-206ENST00000558338 MBTD1Q05BQ5 628 aa7.65□□□□□ -1.18
VPS13C-206ENST00000558338 LAMC2Q13753 1193 aa7.65□□□□□ -1.18
VPS13C-206ENST00000558338 TRIP13Q15645 432 aaPredicted RBP7.65□□□□□ -1.18
VPS13C-206ENST00000558338 QPCTQ16769 361 aa7.65□□□□□ -1.18
VPS13C-206ENST00000558338 LONRF1Q17RB8 773 aa7.65□□□□□ -1.18
VPS13C-206ENST00000558338 HSDL1Q3SXM5 330 aa7.65□□□□□ -1.18
VPS13C-206ENST00000558338 WDR78Q5VTH9 848 aa7.65□□□□□ -1.18
VPS13C-206ENST00000558338 EFCAB12Q6NXP0 572 aa7.65□□□□□ -1.18
VPS13C-206ENST00000558338 CCDC62Q6P9F0 684 aa7.65□□□□□ -1.18
VPS13C-206ENST00000558338 MFSD7Q6UXD7 560 aa7.65□□□□□ -1.18
VPS13C-206ENST00000558338 SCARA5Q6ZMJ2 495 aa7.65□□□□□ -1.18
VPS13C-206ENST00000558338 CENPUQ71F23 418 aa7.65□□□□□ -1.18
VPS13C-206ENST00000558338 EEPD1Q7L9B9 569 aa7.65□□□□□ -1.18
VPS13C-206ENST00000558338 TDRPQ86YL5 185 aa7.65□□□□□ -1.18
VPS13C-206ENST00000558338 UHMK1Q8TAS1 419 aaKnown RBP7.65□□□□□ -1.18
VPS13C-206ENST00000558338 SPACA7Q96KW9 195 aa7.65□□□□□ -1.18
VPS13C-206ENST00000558338 FGD4Q96M96 766 aa7.65□□□□□ -1.18
VPS13C-206ENST00000558338 PRMT1Q99873 361 aaKnown RBP7.65□□□□□ -1.18
VPS13C-206ENST00000558338 LRRC4CQ9HCJ2 640 aa7.65□□□□□ -1.18
VPS13C-206ENST00000558338 SBF1O95248 1867 aa7.65□□□□□ -1.19
VPS13C-206ENST00000558338 TMEM120BA0PK00 339 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 LRRD1A4D1F6 860 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 ADM5C9JUS6 153 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 STAU1O95793 577 aaKnown RBP7.64□□□□□ -1.19
VPS13C-206ENST00000558338 VIMP08670 466 aaKnown RBP7.64□□□□□ -1.19
VPS13C-206ENST00000558338 TXNP10599 105 aaKnown RBP7.64□□□□□ -1.19
VPS13C-206ENST00000558338 KRT3P12035 628 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 DESP17661 470 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 PHBP35232 272 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 CDKN2BP42772 138 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 ARSEP51690 589 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 CCNA1P78396 465 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 ZNF252P-AS1Q0IIN9 211 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 ZNF268Q14587 947 aaPredicted RBP7.64□□□□□ -1.19
VPS13C-206ENST00000558338 RASA2Q15283 850 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 LLGL1Q15334 1064 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 STILQ15468 1287 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 OASLQ15646 514 aaKnown RBP7.64□□□□□ -1.19
VPS13C-206ENST00000558338 KYNUQ16719 465 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 ANKRD20A8PQ5CZ79 823 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 KAZNQ674X7 775 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 SDE2Q6IQ49 451 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 PIGWQ7Z7B1 504 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 PACS2Q86VP3 889 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 TRIM50Q86XT4 487 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 SUGP1Q8IWZ8 645 aaKnown RBP7.64□□□□□ -1.19
VPS13C-206ENST00000558338 FBXO16Q8IX29 292 aaPredicted RBP7.64□□□□□ -1.19
VPS13C-206ENST00000558338 RBM15Q96T37 977 aaKnown RBP eCLIP7.64□□□□□ -1.19
VPS13C-206ENST00000558338 NCAPGQ9BPX3 1015 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 SYNCQ9H7C4 482 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 PRM3Q9NNZ6 103 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 VTA1Q9NP79 307 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 FETUBQ9UGM5 382 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 LIMD1Q9UGP4 676 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 ITGA11Q9UKX5 1188 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 DNPEPQ9ULA0 475 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 KIAA1257Q9ULG3 409 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 RALGAPA2Q2PPJ7 1873 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 hCG_2014768A0A024R1R8 64 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 EXOC1LA0A1B0GW35 172 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 CCT8L1PA6NM43 557 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 O00370 1275 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 DNAJC8O75937 253 aaPredicted RBP7.64□□□□□ -1.19
VPS13C-206ENST00000558338 RNF8O76064 485 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 C22orf31O95567 290 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 GH1P01241 217 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 HMGCRP04035 888 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 KRT19P08727 400 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 CXCL8P10145 99 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 VDRP11473 427 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 BRAFP15056 766 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 TSHRP16473 764 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 GABRB2P47870 512 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 SLC18A1P54219 525 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 PSMC1P62191 440 aaKnown RBP7.64□□□□□ -1.19
VPS13C-206ENST00000558338 SLC25A11Q02978 314 aaKnown RBP7.64□□□□□ -1.19
VPS13C-206ENST00000558338 PTPN11Q06124 597 aaPredicted RBP7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms