RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 CHRM2P08172 466 aa5.66□□□□□ -1.5
SCFD1-221ENST00000556534 CYP2C9P11712 490 aa5.66□□□□□ -1.5
SCFD1-221ENST00000556534 HMGA2P52926 109 aa5.66□□□□□ -1.5
SCFD1-221ENST00000556534 TBX4P57082 545 aa5.66□□□□□ -1.5
SCFD1-221ENST00000556534 NXPH1P58417 271 aa5.66□□□□□ -1.5
SCFD1-221ENST00000556534 RPS16P62249 146 aaKnown RBP5.66□□□□□ -1.5
SCFD1-221ENST00000556534 ZNF169Q14929 603 aaPredicted RBP5.66□□□□□ -1.5
SCFD1-221ENST00000556534 PTPRRQ15256 657 aa5.66□□□□□ -1.5
SCFD1-221ENST00000556534 NBPF8Q3BBV2 869 aa5.66□□□□□ -1.5
SCFD1-221ENST00000556534 SLC44A4Q53GD3 710 aa5.66□□□□□ -1.5
SCFD1-221ENST00000556534 C3orf38Q5JPI3 329 aa5.66□□□□□ -1.5
SCFD1-221ENST00000556534 ARHGAP40Q5TG30 622 aa5.66□□□□□ -1.5
SCFD1-221ENST00000556534 ZNF280BQ86YH2 543 aa5.66□□□□□ -1.5
SCFD1-221ENST00000556534 MPP5Q8N3R9 675 aa5.66□□□□□ -1.5
SCFD1-221ENST00000556534 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.66□□□□□ -1.5
SCFD1-221ENST00000556534 SLC9A6Q92581 669 aa5.66□□□□□ -1.5
SCFD1-221ENST00000556534 FBXL20Q96IG2 436 aa5.66□□□□□ -1.5
SCFD1-221ENST00000556534 PDLIM2Q96JY6 352 aa5.66□□□□□ -1.5
SCFD1-221ENST00000556534 MSLNLQ96KJ4 702 aa5.66□□□□□ -1.5
SCFD1-221ENST00000556534 APOL5Q9BWW9 433 aa5.66□□□□□ -1.5
SCFD1-221ENST00000556534 MS4A7Q9GZW8 240 aaPredicted RBP5.66□□□□□ -1.5
SCFD1-221ENST00000556534 SACM1LQ9NTJ5 587 aa5.66□□□□□ -1.5
SCFD1-221ENST00000556534 OGDHLQ9ULD0 1010 aa5.66□□□□□ -1.5
SCFD1-221ENST00000556534 SSX2IPQ9Y2D8 614 aa5.66□□□□□ -1.5
SCFD1-221ENST00000556534 MAP4K4O95819 1239 aaPredicted RBP5.65□□□□□ -1.5
SCFD1-221ENST00000556534 LMNAP02545 664 aaKnown RBP5.65□□□□□ -1.5
SCFD1-221ENST00000556534 PDHA1P08559 390 aa5.65□□□□□ -1.5
SCFD1-221ENST00000556534 HMGB1P09429 215 aaKnown RBP5.65□□□□□ -1.5
SCFD1-221ENST00000556534 SLC5A1P13866 664 aa5.65□□□□□ -1.5
SCFD1-221ENST00000556534 TRIM27P14373 513 aa5.65□□□□□ -1.5
SCFD1-221ENST00000556534 KLRC1P26715 233 aa5.65□□□□□ -1.5
SCFD1-221ENST00000556534 PCSK6P29122 969 aa5.65□□□□□ -1.5
SCFD1-221ENST00000556534 MAPK10P53779 464 aa5.65□□□□□ -1.5
SCFD1-221ENST00000556534 SIM1P81133 766 aaPredicted RBP5.65□□□□□ -1.5
SCFD1-221ENST00000556534 PURAQ00577 322 aaKnown RBP5.65□□□□□ -1.5
SCFD1-221ENST00000556534 HLTFQ14527 1009 aaKnown RBP eCLIP5.65□□□□□ -1.5
SCFD1-221ENST00000556534 SFRP4Q6FHJ7 346 aaPredicted RBP5.65□□□□□ -1.5
SCFD1-221ENST00000556534 RGS7BPQ6MZT1 257 aaPredicted RBP5.65□□□□□ -1.5
SCFD1-221ENST00000556534 PEG10Q86TG7 708 aaKnown RBP5.65□□□□□ -1.5
SCFD1-221ENST00000556534 TFAP2BQ92481 460 aa5.65□□□□□ -1.5
SCFD1-221ENST00000556534 FKBP10Q96AY3 582 aa5.65□□□□□ -1.5
SCFD1-221ENST00000556534 PBKQ96KB5 322 aa5.65□□□□□ -1.5
SCFD1-221ENST00000556534 NELL2Q99435 816 aa5.65□□□□□ -1.5
SCFD1-221ENST00000556534 CXorf36Q9H7Y0 433 aa5.65□□□□□ -1.5
SCFD1-221ENST00000556534 ZNF287Q9HBT7 754 aa5.65□□□□□ -1.5
SCFD1-221ENST00000556534 KIAA1586Q9HCI6 787 aa5.65□□□□□ -1.5
SCFD1-221ENST00000556534 A1CFQ9NQ94 594 aaKnown RBP5.65□□□□□ -1.5
SCFD1-221ENST00000556534 LRIT1Q9P2V4 623 aa5.65□□□□□ -1.5
SCFD1-221ENST00000556534 SERTAD3Q9UJW9 196 aa5.65□□□□□ -1.5
SCFD1-221ENST00000556534 NDRG4Q9ULP0 352 aaKnown RBP5.65□□□□□ -1.5
SCFD1-221ENST00000556534 hCG_1984214I3L0E3 225 aa5.64□□□□□ -1.51
SCFD1-221ENST00000556534 APAF1O14727 1248 aa5.64□□□□□ -1.51
SCFD1-221ENST00000556534 PPM1DO15297 605 aa5.64□□□□□ -1.51
SCFD1-221ENST00000556534 CSF1RP07333 972 aa5.64□□□□□ -1.51
SCFD1-221ENST00000556534 XRCC6P12956 609 aaKnown RBP eCLIP5.64□□□□□ -1.51
SCFD1-221ENST00000556534 IL1R1P14778 569 aa5.64□□□□□ -1.51
SCFD1-221ENST00000556534 LRPAP1P30533 357 aa5.64□□□□□ -1.51
SCFD1-221ENST00000556534 MYO1EQ12965 1108 aa5.64□□□□□ -1.51
SCFD1-221ENST00000556534 KRTAP15-1Q3LI76 137 aa5.64□□□□□ -1.51
SCFD1-221ENST00000556534 PLA1AQ53H76 456 aa5.64□□□□□ -1.51
SCFD1-221ENST00000556534 ICE2Q659A1 982 aa5.64□□□□□ -1.51
SCFD1-221ENST00000556534 OLFML1Q6UWY5 402 aa5.64□□□□□ -1.51
SCFD1-221ENST00000556534 RAPGEF4Q8WZA2 1011 aa5.64□□□□□ -1.51
SCFD1-221ENST00000556534 CCDC136Q96JN2 1154 aa5.64□□□□□ -1.51
SCFD1-221ENST00000556534 NUP62CLQ9H1M0 184 aa5.64□□□□□ -1.51
SCFD1-221ENST00000556534 SYNPO2LQ9H987 977 aa5.64□□□□□ -1.51
SCFD1-221ENST00000556534 KLC4Q9NSK0 619 aa5.64□□□□□ -1.51
SCFD1-221ENST00000556534 RGS17Q9UGC6 210 aaPredicted RBP5.64□□□□□ -1.51
SCFD1-221ENST00000556534 FAM50BQ9Y247 325 aa5.64□□□□□ -1.51
SCFD1-221ENST00000556534 MRPS17Q9Y2R5 130 aaKnown RBP5.64□□□□□ -1.51
SCFD1-221ENST00000556534 PYCARD-AS1I3L0S3 204 aa5.63□□□□□ -1.51
SCFD1-221ENST00000556534 PRC1O43663 620 aa5.63□□□□□ -1.51
SCFD1-221ENST00000556534 PQBP1O60828 265 aaKnown RBP5.63□□□□□ -1.51
SCFD1-221ENST00000556534 CXCR5P32302 372 aa5.63□□□□□ -1.51
SCFD1-221ENST00000556534 SP2Q02086 613 aa5.63□□□□□ -1.51
SCFD1-221ENST00000556534 KRT17Q04695 432 aa5.63□□□□□ -1.51
SCFD1-221ENST00000556534 EIF2B5Q13144 721 aaKnown RBP5.63□□□□□ -1.51
SCFD1-221ENST00000556534 MGAT5BQ3V5L5 792 aa5.63□□□□□ -1.51
SCFD1-221ENST00000556534 COBLL1Q53SF7 1204 aa5.63□□□□□ -1.51
SCFD1-221ENST00000556534 PRR16Q569H4 304 aa5.63□□□□□ -1.51
SCFD1-221ENST00000556534 CCDC181Q5TID7 509 aa5.63□□□□□ -1.51
SCFD1-221ENST00000556534 ZDHHC24Q6UX98 284 aa5.63□□□□□ -1.51
SCFD1-221ENST00000556534 MAVSQ7Z434 540 aa5.63□□□□□ -1.51
SCFD1-221ENST00000556534 ATG4AQ8WYN0 398 aa5.63□□□□□ -1.51
SCFD1-221ENST00000556534 PHKBQ93100 1093 aa5.63□□□□□ -1.51
SCFD1-221ENST00000556534 RFKQ969G6 155 aa5.63□□□□□ -1.51
SCFD1-221ENST00000556534 SPSB4Q96A44 273 aa5.63□□□□□ -1.51
SCFD1-221ENST00000556534 ALG8Q9BVK2 526 aa5.63□□□□□ -1.51
SCFD1-221ENST00000556534 PRDM13Q9H4Q3 707 aa5.63□□□□□ -1.51
SCFD1-221ENST00000556534 TBC1D30Q9Y2I9 924 aa5.63□□□□□ -1.51
SCFD1-221ENST00000556534 F8W8V4 182 aa5.62□□□□□ -1.51
SCFD1-221ENST00000556534 PMM2O15305 246 aa5.62□□□□□ -1.51
SCFD1-221ENST00000556534 ELFN1P0C7U0 828 aa5.62□□□□□ -1.51
SCFD1-221ENST00000556534 ZKSCAN1P17029 563 aaPredicted RBP5.62□□□□□ -1.51
SCFD1-221ENST00000556534 RPL17P18621 184 aaKnown RBP5.62□□□□□ -1.51
SCFD1-221ENST00000556534 KCNA3P22001 575 aa5.62□□□□□ -1.51
SCFD1-221ENST00000556534 GRIA3P42263 894 aa5.62□□□□□ -1.51
SCFD1-221ENST00000556534 CLK3P49761 638 aaKnown RBP5.62□□□□□ -1.51
SCFD1-221ENST00000556534 DGKEP52429 567 aa5.62□□□□□ -1.51
SCFD1-221ENST00000556534 HTRA4P83105 476 aaPredicted RBP5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms