RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 CEP120Q8N960 986 aa10.9□□□□□ -0.66
SCFD1-220ENST00000556486 SNX29Q8TEQ0 813 aa10.9□□□□□ -0.66
SCFD1-220ENST00000556486 DEPDC1BQ8WUY9 529 aa10.9□□□□□ -0.66
SCFD1-220ENST00000556486 GAB3Q8WWW8 586 aa10.9□□□□□ -0.66
SCFD1-220ENST00000556486 ZNF512Q96ME7 567 aaPredicted RBP10.9□□□□□ -0.66
SCFD1-220ENST00000556486 ZMAT2Q96NC0 199 aaKnown RBP10.9□□□□□ -0.66
SCFD1-220ENST00000556486 EDEM2Q9BV94 578 aa10.9□□□□□ -0.66
SCFD1-220ENST00000556486 ASAH2Q9NR71 780 aa10.9□□□□□ -0.66
SCFD1-220ENST00000556486 FBXL5Q9UKA1 691 aa10.9□□□□□ -0.66
SCFD1-220ENST00000556486 INVSQ9Y283 1065 aa10.9□□□□□ -0.66
SCFD1-220ENST00000556486 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.9□□□□□ -0.66
SCFD1-220ENST00000556486 GCN1Q92616 2671 aaKnown RBP10.9□□□□□ -0.67
SCFD1-220ENST00000556486 SETXQ7Z333 2677 aaKnown RBP10.89□□□□□ -0.67
SCFD1-220ENST00000556486 MEFVO15553 781 aaPredicted RBP10.89□□□□□ -0.67
SCFD1-220ENST00000556486 FOXD2O60548 495 aaPredicted RBP10.89□□□□□ -0.67
SCFD1-220ENST00000556486 TOM1L1O75674 476 aa10.89□□□□□ -0.67
SCFD1-220ENST00000556486 OR4Q2P0C623 313 aa10.89□□□□□ -0.67
SCFD1-220ENST00000556486 CPB1P15086 417 aa10.89□□□□□ -0.67
SCFD1-220ENST00000556486 RAP1GAPP47736 663 aa10.89□□□□□ -0.67
SCFD1-220ENST00000556486 DAB2P98082 770 aa10.89□□□□□ -0.67
SCFD1-220ENST00000556486 DHX9Q08211 1270 aaKnown RBP10.89□□□□□ -0.67
SCFD1-220ENST00000556486 CTXN3Q4LDR2 81 aa10.89□□□□□ -0.67
SCFD1-220ENST00000556486 TBCELQ5QJ74 424 aa10.89□□□□□ -0.67
SCFD1-220ENST00000556486 SH3PXD2AQ5TCZ1 1133 aa10.89□□□□□ -0.67
SCFD1-220ENST00000556486 KRT79Q5XKE5 535 aa10.89□□□□□ -0.67
SCFD1-220ENST00000556486 TPGS2Q68CL5 300 aa10.89□□□□□ -0.67
SCFD1-220ENST00000556486 IQCEQ6IPM2 695 aa10.89□□□□□ -0.67
SCFD1-220ENST00000556486 RINT1Q6NUQ1 792 aa10.89□□□□□ -0.67
SCFD1-220ENST00000556486 MPZL3Q6UWV2 235 aa10.89□□□□□ -0.67
SCFD1-220ENST00000556486 ZPBP2Q6X784 338 aa10.89□□□□□ -0.67
SCFD1-220ENST00000556486 CACNA2D4Q7Z3S7 1137 aa10.89□□□□□ -0.67
SCFD1-220ENST00000556486 ZCCHC14Q8WYQ9 949 aaKnown RBP10.89□□□□□ -0.67
SCFD1-220ENST00000556486 C18orf25Q96B23 403 aaPredicted RBP10.89□□□□□ -0.67
SCFD1-220ENST00000556486 SUSD3Q96L08 255 aa10.89□□□□□ -0.67
SCFD1-220ENST00000556486 PGLYRP2Q96PD5 576 aa10.89□□□□□ -0.67
SCFD1-220ENST00000556486 HHIPQ96QV1 700 aa10.89□□□□□ -0.67
SCFD1-220ENST00000556486 MMTAG2Q9BU76 263 aaKnown RBP10.89□□□□□ -0.67
SCFD1-220ENST00000556486 SCNM1Q9BWG6 230 aa10.89□□□□□ -0.67
SCFD1-220ENST00000556486 SMG9Q9H0W8 520 aaKnown RBP10.89□□□□□ -0.67
SCFD1-220ENST00000556486 TRPV5Q9NQA5 729 aa10.89□□□□□ -0.67
SCFD1-220ENST00000556486 KCND2Q9NZV8 630 aa10.89□□□□□ -0.67
SCFD1-220ENST00000556486 SCHIP1Q9P0W5 487 aaPredicted RBP10.89□□□□□ -0.67
SCFD1-220ENST00000556486 PCDHB6Q9Y5E3 794 aa10.89□□□□□ -0.67
SCFD1-220ENST00000556486 LOC400499M0QZD8 3231 aa10.89□□□□□ -0.67
SCFD1-220ENST00000556486 MYBPHLA2RUH7 354 aa10.88□□□□□ -0.67
SCFD1-220ENST00000556486 CCDC169A6NNP5 214 aa10.88□□□□□ -0.67
SCFD1-220ENST00000556486 E9PMD0 336 aa10.88□□□□□ -0.67
SCFD1-220ENST00000556486 H7C4K7 107 aa10.88□□□□□ -0.67
SCFD1-220ENST00000556486 PODXLO00592 558 aa10.88□□□□□ -0.67
SCFD1-220ENST00000556486 CHADO15335 359 aa10.88□□□□□ -0.67
SCFD1-220ENST00000556486 HIP1RO75146 1068 aa10.88□□□□□ -0.67
SCFD1-220ENST00000556486 SOAT2O75908 522 aa10.88□□□□□ -0.67
SCFD1-220ENST00000556486 PAPSS2O95340 614 aaPredicted RBP10.88□□□□□ -0.67
SCFD1-220ENST00000556486 SCP2P22307 547 aa10.88□□□□□ -0.67
SCFD1-220ENST00000556486 EPHA5P54756 1037 aa10.88□□□□□ -0.67
SCFD1-220ENST00000556486 CREB5Q02930 508 aa10.88□□□□□ -0.67
SCFD1-220ENST00000556486 GNL2Q13823 731 aaKnown RBP10.88□□□□□ -0.67
SCFD1-220ENST00000556486 CCINQ13939 588 aa10.88□□□□□ -0.67
SCFD1-220ENST00000556486 IL17AQ16552 155 aa10.88□□□□□ -0.67
SCFD1-220ENST00000556486 DGKKQ5KSL6 1271 aa10.88□□□□□ -0.67
SCFD1-220ENST00000556486 NT5DC4Q86YG4 428 aa10.88□□□□□ -0.67
SCFD1-220ENST00000556486 ARID3BQ8IVW6 561 aaPredicted RBP10.88□□□□□ -0.67
SCFD1-220ENST00000556486 KDF1Q8NAX2 398 aaPredicted RBP10.88□□□□□ -0.67
SCFD1-220ENST00000556486 FAM184AQ8NB25 1140 aa10.88□□□□□ -0.67
SCFD1-220ENST00000556486 TMEM161BQ8NDZ6 487 aa10.88□□□□□ -0.67
SCFD1-220ENST00000556486 BEST2Q8NFU1 509 aa10.88□□□□□ -0.67
SCFD1-220ENST00000556486 NUP210Q8TEM1 1887 aaPredicted RBP10.88□□□□□ -0.67
SCFD1-220ENST00000556486 ALKBH8Q96BT7 664 aaKnown RBP10.88□□□□□ -0.67
SCFD1-220ENST00000556486 ACAP3Q96P50 834 aa10.88□□□□□ -0.67
SCFD1-220ENST00000556486 RUSC1Q9BVN2 902 aa10.88□□□□□ -0.67
SCFD1-220ENST00000556486 TARS2Q9BW92 718 aaKnown RBP10.88□□□□□ -0.67
SCFD1-220ENST00000556486 OXCT2Q9BYC2 517 aaPredicted RBP10.88□□□□□ -0.67
SCFD1-220ENST00000556486 KMT5AQ9NQR1 393 aa10.88□□□□□ -0.67
SCFD1-220ENST00000556486 TIMM13Q9Y5L4 95 aaPredicted RBP10.88□□□□□ -0.67
SCFD1-220ENST00000556486 CITO14578 2027 aa10.87□□□□□ -0.67
SCFD1-220ENST00000556486 A6NJY4 79 aa10.87□□□□□ -0.67
SCFD1-220ENST00000556486 PP2D1A8MPX8 630 aa10.87□□□□□ -0.67
SCFD1-220ENST00000556486 SLC26A4O43511 780 aa10.87□□□□□ -0.67
SCFD1-220ENST00000556486 PRAMEF12O95522 483 aa10.87□□□□□ -0.67
SCFD1-220ENST00000556486 PLS3P13797 630 aa10.87□□□□□ -0.67
SCFD1-220ENST00000556486 AARSP49588 968 aaKnown RBP eCLIP10.87□□□□□ -0.67
SCFD1-220ENST00000556486 WNT7BP56706 349 aa10.87□□□□□ -0.67
SCFD1-220ENST00000556486 PSMA6P60900 246 aaKnown RBP10.87□□□□□ -0.67
SCFD1-220ENST00000556486 SKOR1P84550 965 aa10.87□□□□□ -0.67
SCFD1-220ENST00000556486 ATP2C1P98194 919 aaPredicted RBP10.87□□□□□ -0.67
SCFD1-220ENST00000556486 MCL1Q07820 350 aa10.87□□□□□ -0.67
SCFD1-220ENST00000556486 PSMD2Q13200 908 aa10.87□□□□□ -0.67
SCFD1-220ENST00000556486 ARID5BQ14865 1188 aa10.87□□□□□ -0.67
SCFD1-220ENST00000556486 SLC10A6Q3KNW5 377 aa10.87□□□□□ -0.67
SCFD1-220ENST00000556486 UAP1L1Q3KQV9 507 aa10.87□□□□□ -0.67
SCFD1-220ENST00000556486 RILPL1Q5EBL4 403 aa10.87□□□□□ -0.67
SCFD1-220ENST00000556486 NAIF1Q69YI7 327 aaPredicted RBP10.87□□□□□ -0.67
SCFD1-220ENST00000556486 LRSAM1Q6UWE0 723 aa10.87□□□□□ -0.67
SCFD1-220ENST00000556486 DTHD1Q6ZMT9 781 aa10.87□□□□□ -0.67
SCFD1-220ENST00000556486 KCNK18Q7Z418 384 aa10.87□□□□□ -0.67
SCFD1-220ENST00000556486 CYP2U1Q7Z449 544 aa10.87□□□□□ -0.67
SCFD1-220ENST00000556486 SYT2Q8N9I0 419 aaPredicted RBP10.87□□□□□ -0.67
SCFD1-220ENST00000556486 LEMD2Q8NC56 503 aa10.87□□□□□ -0.67
SCFD1-220ENST00000556486 CRISPLD1Q9H336 500 aa10.87□□□□□ -0.67
SCFD1-220ENST00000556486 C8orf33Q9H7E9 229 aaPredicted RBP10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms