RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 NCLP19338 710 aaKnown RBP4.86□□□□□ -1.63
SCFD1-216ENST00000555550 LPOP22079 712 aaPredicted RBP4.86□□□□□ -1.63
SCFD1-216ENST00000555550 MMP13P45452 471 aa4.86□□□□□ -1.63
SCFD1-216ENST00000555550 KCNJ5P48544 419 aa4.86□□□□□ -1.63
SCFD1-216ENST00000555550 POLGP54098 1239 aaPredicted RBP4.86□□□□□ -1.63
SCFD1-216ENST00000555550 TBCCQ15814 346 aa4.86□□□□□ -1.63
SCFD1-216ENST00000555550 PLAC9Q5JTB6 97 aa4.86□□□□□ -1.63
SCFD1-216ENST00000555550 CEP85Q6P2H3 762 aa4.86□□□□□ -1.63
SCFD1-216ENST00000555550 USP37Q86T82 979 aa4.86□□□□□ -1.63
SCFD1-216ENST00000555550 PPP1R3BQ86XI6 285 aa4.86□□□□□ -1.63
SCFD1-216ENST00000555550 DDX17Q92841 729 aaKnown RBP4.86□□□□□ -1.63
SCFD1-216ENST00000555550 FKBP10Q96AY3 582 aa4.86□□□□□ -1.63
SCFD1-216ENST00000555550 ALG8Q9BVK2 526 aa4.86□□□□□ -1.63
SCFD1-216ENST00000555550 ADGRE3Q9BY15 652 aa4.86□□□□□ -1.63
SCFD1-216ENST00000555550 VPS16Q9H269 839 aa4.86□□□□□ -1.63
SCFD1-216ENST00000555550 SARS2Q9NP81 518 aaKnown RBP4.86□□□□□ -1.63
SCFD1-216ENST00000555550 TYW1Q9NV66 732 aaKnown RBP4.86□□□□□ -1.63
SCFD1-216ENST00000555550 MRPS18AQ9NVS2 196 aaKnown RBP4.86□□□□□ -1.63
SCFD1-216ENST00000555550 ETAA1Q9NY74 926 aa4.86□□□□□ -1.63
SCFD1-216ENST00000555550 EHD3Q9NZN3 535 aa4.86□□□□□ -1.63
SCFD1-216ENST00000555550 AGAP1Q9UPQ3 857 aa4.86□□□□□ -1.63
SCFD1-216ENST00000555550 LRP12Q9Y561 859 aa4.86□□□□□ -1.63
SCFD1-216ENST00000555550 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.85□□□□□ -1.63
SCFD1-216ENST00000555550 PRSS29PA6NIE9 313 aa4.85□□□□□ -1.63
SCFD1-216ENST00000555550 PRRT4C9JH25 899 aa4.85□□□□□ -1.63
SCFD1-216ENST00000555550 TUBB4AP04350 444 aa4.85□□□□□ -1.63
SCFD1-216ENST00000555550 PDGFRBP09619 1106 aa4.85□□□□□ -1.63
SCFD1-216ENST00000555550 NDUFB7P17568 137 aa4.85□□□□□ -1.63
SCFD1-216ENST00000555550 CD6P30203 668 aa4.85□□□□□ -1.63
SCFD1-216ENST00000555550 EXOSC9Q06265 439 aaKnown RBP4.85□□□□□ -1.63
SCFD1-216ENST00000555550 PLS1Q14651 629 aa4.85□□□□□ -1.63
SCFD1-216ENST00000555550 TTF1Q15361 905 aaPredicted RBP4.85□□□□□ -1.63
SCFD1-216ENST00000555550 RBM20Q5T481 1227 aaKnown RBP4.85□□□□□ -1.63
SCFD1-216ENST00000555550 SAMD14Q8IZD0 417 aaPredicted RBP4.85□□□□□ -1.63
SCFD1-216ENST00000555550 FANCBQ8NB91 859 aa4.85□□□□□ -1.63
SCFD1-216ENST00000555550 FAM46DQ8NEK8 389 aa4.85□□□□□ -1.63
SCFD1-216ENST00000555550 MTFMTQ96DP5 389 aaKnown RBP4.85□□□□□ -1.63
SCFD1-216ENST00000555550 SLC35A4Q96G79 324 aa4.85□□□□□ -1.63
SCFD1-216ENST00000555550 CDK5RAP3Q96JB5 506 aa4.85□□□□□ -1.63
SCFD1-216ENST00000555550 ACTRT3Q9BYD9 372 aa4.85□□□□□ -1.63
SCFD1-216ENST00000555550 ARMT1Q9H993 441 aa4.85□□□□□ -1.63
SCFD1-216ENST00000555550 TCF7L1Q9HCS4 588 aa4.85□□□□□ -1.63
SCFD1-216ENST00000555550 ARHGEF3Q9NR81 526 aa4.85□□□□□ -1.63
SCFD1-216ENST00000555550 CNNM1Q9NRU3 951 aa4.85□□□□□ -1.63
SCFD1-216ENST00000555550 DDX56Q9NY93 547 aaKnown RBP4.85□□□□□ -1.63
SCFD1-216ENST00000555550 ZNF180Q9UJW8 692 aa4.85□□□□□ -1.63
SCFD1-216ENST00000555550 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.85□□□□□ -1.63
SCFD1-216ENST00000555550 SPATA31A3Q5VYP0 1347 aa4.85□□□□□ -1.63
SCFD1-216ENST00000555550 SMIM35A0A1B0GVV1 85 aa4.84□□□□□ -1.63
SCFD1-216ENST00000555550 ZNF213O14771 459 aa4.84□□□□□ -1.63
SCFD1-216ENST00000555550 INSIG1O15503 277 aa4.84□□□□□ -1.63
SCFD1-216ENST00000555550 AP1G1O43747 822 aa4.84□□□□□ -1.63
SCFD1-216ENST00000555550 PDHA1P08559 390 aa4.84□□□□□ -1.63
SCFD1-216ENST00000555550 ARHGAP25P42331 645 aa4.84□□□□□ -1.63
SCFD1-216ENST00000555550 PIN1Q13526 163 aaPredicted RBP4.84□□□□□ -1.63
SCFD1-216ENST00000555550 BMPR2Q13873 1038 aa4.84□□□□□ -1.63
SCFD1-216ENST00000555550 KHDC1LQ5JSQ8 128 aa4.84□□□□□ -1.63
SCFD1-216ENST00000555550 FAM160B1Q5W0V3 765 aa4.84□□□□□ -1.63
SCFD1-216ENST00000555550 LAYNQ6UX15 382 aa4.84□□□□□ -1.63
SCFD1-216ENST00000555550 ZNF551Q7Z340 670 aaPredicted RBP4.84□□□□□ -1.63
SCFD1-216ENST00000555550 CNGA4Q8IV77 575 aa4.84□□□□□ -1.63
SCFD1-216ENST00000555550 ADAMTS15Q8TE58 950 aa4.84□□□□□ -1.63
SCFD1-216ENST00000555550 HPS3Q969F9 1004 aa4.84□□□□□ -1.63
SCFD1-216ENST00000555550 HMCESQ96FZ2 354 aa4.84□□□□□ -1.63
SCFD1-216ENST00000555550 LRGUKQ96M69 825 aa4.84□□□□□ -1.63
SCFD1-216ENST00000555550 TTYH3Q9C0H2 523 aa4.84□□□□□ -1.63
SCFD1-216ENST00000555550 PCDHA6Q9UN73 950 aa4.84□□□□□ -1.63
SCFD1-216ENST00000555550 STXBP5LQ9Y2K9 1186 aa4.84□□□□□ -1.63
SCFD1-216ENST00000555550 E2F8A0AVK6 867 aa4.83□□□□□ -1.64
SCFD1-216ENST00000555550 ABLIM3O94929 683 aa4.83□□□□□ -1.64
SCFD1-216ENST00000555550 ALDH2P05091 517 aa4.83□□□□□ -1.64
SCFD1-216ENST00000555550 HSPA6P17066 643 aa4.83□□□□□ -1.64
SCFD1-216ENST00000555550 PCSK6P29122 969 aa4.83□□□□□ -1.64
SCFD1-216ENST00000555550 GCLCP48506 637 aaPredicted RBP4.83□□□□□ -1.64
SCFD1-216ENST00000555550 SOX8P57073 446 aa4.83□□□□□ -1.64
SCFD1-216ENST00000555550 RAPGEF1Q13905 1077 aa4.83□□□□□ -1.64
SCFD1-216ENST00000555550 ZNF267Q14586 743 aaPredicted RBP4.83□□□□□ -1.64
SCFD1-216ENST00000555550 AMOTQ4VCS5 1084 aa4.83□□□□□ -1.64
SCFD1-216ENST00000555550 FAM136AQ96C01 138 aa4.83□□□□□ -1.64
SCFD1-216ENST00000555550 C1GALT1C1Q96EU7 318 aa4.83□□□□□ -1.64
SCFD1-216ENST00000555550 OSBPL9Q96SU4 736 aa4.83□□□□□ -1.64
SCFD1-216ENST00000555550 CGRRF1Q99675 332 aa4.83□□□□□ -1.64
SCFD1-216ENST00000555550 PRSS22Q9GZN4 317 aa4.83□□□□□ -1.64
SCFD1-216ENST00000555550 CPA4Q9UI42 421 aa4.83□□□□□ -1.64
SCFD1-216ENST00000555550 CCDC187A0A096LP49 1063 aa4.82□□□□□ -1.64
SCFD1-216ENST00000555550 DNAJB5O75953 348 aa4.82□□□□□ -1.64
SCFD1-216ENST00000555550 PIM1P11309 404 aaPredicted RBP4.82□□□□□ -1.64
SCFD1-216ENST00000555550 HDCP19113 662 aa4.82□□□□□ -1.64
SCFD1-216ENST00000555550 ZNF134P52741 427 aa4.82□□□□□ -1.64
SCFD1-216ENST00000555550 NKX6-1P78426 367 aaPredicted RBP4.82□□□□□ -1.64
SCFD1-216ENST00000555550 MCL1Q07820 350 aa4.82□□□□□ -1.64
SCFD1-216ENST00000555550 ATAT1Q5SQI0 421 aa4.82□□□□□ -1.64
SCFD1-216ENST00000555550 TMEM108Q6UXF1 575 aa4.82□□□□□ -1.64
SCFD1-216ENST00000555550 SLC29A4Q7RTT9 530 aa4.82□□□□□ -1.64
SCFD1-216ENST00000555550 ZDHHC17Q8IUH5 632 aa4.82□□□□□ -1.64
SCFD1-216ENST00000555550 SPATA3Q8NHX4 192 aa4.82□□□□□ -1.64
SCFD1-216ENST00000555550 KLHDC4Q8TBB5 520 aa4.82□□□□□ -1.64
SCFD1-216ENST00000555550 STAG1Q8WVM7 1258 aa4.82□□□□□ -1.64
SCFD1-216ENST00000555550 JPH3Q8WXH2 748 aaPredicted RBP4.82□□□□□ -1.64
SCFD1-216ENST00000555550 SLC46A1Q96NT5 459 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms