RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 SPPL2BQ8TCT7 592 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 C2orf15Q8WU43 125 aaKnown RBP10.43□□□□□ -0.74
SCFD1-215ENST00000555259 WASF1Q92558 559 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 CAMK1GQ96NX5 476 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 CAPN10Q9HC96 672 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 TSC2P49815 1807 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 ADAMTS9Q9P2N4 1935 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 OBSL1O75147 1896 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 PCDH15Q96QU1 1955 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 PLXNB3Q9ULL4 1909 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 CLDN3O15551 220 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 XPOTO43592 962 aaKnown RBP10.43□□□□□ -0.74
SCFD1-215ENST00000555259 SH3BP5O60239 455 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 TADA3O75528 432 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 SERPINF2P08697 491 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 CLTAP09496 248 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 FTH1P19P0C7X4 201 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 FDPSP14324 419 aaKnown RBP10.43□□□□□ -0.74
SCFD1-215ENST00000555259 OPRD1P41143 372 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 MRPS21P82921 87 aaKnown RBP10.43□□□□□ -0.74
SCFD1-215ENST00000555259 PPP2R3AQ06190 1150 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 SMARCB1Q12824 385 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 STRN3Q13033 797 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 USP4Q13107 963 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 NR1H3Q13133 447 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 MAPK7Q13164 816 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 MAP7D1Q3KQU3 841 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 ZPBP2Q6X784 338 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 DIS3L2Q8IYB7 885 aaKnown RBP10.43□□□□□ -0.74
SCFD1-215ENST00000555259 STKLD1Q8NE28 680 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 DRC1Q96MC2 740 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 SLC22A12Q96S37 553 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 HAPLN2Q9GZV7 340 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 DNAAF2Q9NVR5 837 aaKnown RBP10.43□□□□□ -0.74
SCFD1-215ENST00000555259 ABI2Q9NYB9 513 aaPredicted RBP10.43□□□□□ -0.74
SCFD1-215ENST00000555259 MAGED2Q9UNF1 606 aaPredicted RBP10.43□□□□□ -0.74
SCFD1-215ENST00000555259 KIAA1024Q9UPX6 916 aa10.43□□□□□ -0.74
SCFD1-215ENST00000555259 LACTBL1A8MY62 500 aa10.42□□□□□ -0.74
SCFD1-215ENST00000555259 SGK1O00141 431 aa10.42□□□□□ -0.74
SCFD1-215ENST00000555259 ARHGAP33O14559 1287 aa10.42□□□□□ -0.74
SCFD1-215ENST00000555259 PFKFB2O60825 505 aa10.42□□□□□ -0.74
SCFD1-215ENST00000555259 CKMP06732 381 aa10.42□□□□□ -0.74
SCFD1-215ENST00000555259 PAX3P23760 479 aa10.42□□□□□ -0.74
SCFD1-215ENST00000555259 CCT6AP40227 531 aaKnown RBP10.42□□□□□ -0.74
SCFD1-215ENST00000555259 TNFSF9P41273 254 aa10.42□□□□□ -0.74
SCFD1-215ENST00000555259 GPR15P49685 360 aa10.42□□□□□ -0.74
SCFD1-215ENST00000555259 IRX6P78412 446 aaPredicted RBP10.42□□□□□ -0.74
SCFD1-215ENST00000555259 C19orf57Q0VDD7 668 aa10.42□□□□□ -0.74
SCFD1-215ENST00000555259 BYSLQ13895 437 aaKnown RBP10.42□□□□□ -0.74
SCFD1-215ENST00000555259 SPATA1Q5VX52 437 aa10.42□□□□□ -0.74
SCFD1-215ENST00000555259 ALLCQ8N6M5 410 aa10.42□□□□□ -0.74
SCFD1-215ENST00000555259 TXNDC5Q8NBS9 432 aaKnown RBP10.42□□□□□ -0.74
SCFD1-215ENST00000555259 CYP2S1Q96SQ9 504 aa10.42□□□□□ -0.74
SCFD1-215ENST00000555259 NTPCRQ9BSD7 190 aaKnown RBP10.42□□□□□ -0.74
SCFD1-215ENST00000555259 TM6SF1Q9BZW5 370 aa10.42□□□□□ -0.74
SCFD1-215ENST00000555259 LINC00597Q9H2U6 94 aa10.42□□□□□ -0.74
SCFD1-215ENST00000555259 TMEM206Q9H813 350 aa10.42□□□□□ -0.74
SCFD1-215ENST00000555259 C17orf75Q9HAS0 396 aa10.42□□□□□ -0.74
SCFD1-215ENST00000555259 PDRG1Q9NUG6 133 aa10.42□□□□□ -0.74
SCFD1-215ENST00000555259 DDX19AQ9NUU7 478 aaKnown RBP10.42□□□□□ -0.74
SCFD1-215ENST00000555259 BCCIPQ9P287 314 aaKnown RBP eCLIP10.42□□□□□ -0.74
SCFD1-215ENST00000555259 PLXND1Q9Y4D7 1925 aa10.41□□□□□ -0.74
SCFD1-215ENST00000555259 TENM4Q6N022 2769 aa10.41□□□□□ -0.74
SCFD1-215ENST00000555259 AP5Z1O43299 807 aa10.41□□□□□ -0.74
SCFD1-215ENST00000555259 REC8O95072 547 aa10.41□□□□□ -0.74
SCFD1-215ENST00000555259 NFATC1O95644 943 aa10.41□□□□□ -0.74
SCFD1-215ENST00000555259 PRB1P04280 392 aa10.41□□□□□ -0.74
SCFD1-215ENST00000555259 OR52Z1P0C646 297 aa10.41□□□□□ -0.74
SCFD1-215ENST00000555259 USP17L7P0C7H9 530 aa10.41□□□□□ -0.74
SCFD1-215ENST00000555259 CSH1P0DML2 217 aa10.41□□□□□ -0.74
SCFD1-215ENST00000555259 CSH2P0DML3 217 aa10.41□□□□□ -0.74
SCFD1-215ENST00000555259 CHRM1P11229 460 aaPredicted RBP10.41□□□□□ -0.74
SCFD1-215ENST00000555259 MATR3P43243 847 aaKnown RBP eCLIP10.41□□□□□ -0.741e-6■■■□□ 19
SCFD1-215ENST00000555259 SLC14A1Q13336 389 aa10.41□□□□□ -0.74
SCFD1-215ENST00000555259 ENOX2Q16206 610 aaKnown RBP10.41□□□□□ -0.74
SCFD1-215ENST00000555259 GAB4Q2WGN9 574 aa10.41□□□□□ -0.74
SCFD1-215ENST00000555259 C9orf57Q5W0N0 161 aa10.41□□□□□ -0.74
SCFD1-215ENST00000555259 RABEPKQ7Z6M1 372 aa10.41□□□□□ -0.74
SCFD1-215ENST00000555259 IL17RCQ8NAC3 791 aa10.41□□□□□ -0.74
SCFD1-215ENST00000555259 SH3RF2Q8TEC5 729 aa10.41□□□□□ -0.74
SCFD1-215ENST00000555259 HMGB4Q8WW32 186 aa10.41□□□□□ -0.74
SCFD1-215ENST00000555259 RUSC1Q9BVN2 902 aa10.41□□□□□ -0.74
SCFD1-215ENST00000555259 TRPC7Q9HCX4 862 aa10.41□□□□□ -0.74
SCFD1-215ENST00000555259 POLMQ9NP87 494 aaPredicted RBP10.41□□□□□ -0.74
SCFD1-215ENST00000555259 DSEQ9UL01 958 aa10.41□□□□□ -0.74
SCFD1-215ENST00000555259 PCDHB9Q9Y5E1 797 aa10.41□□□□□ -0.74
SCFD1-215ENST00000555259 ANK1P16157 1881 aa10.4□□□□□ -0.74
SCFD1-215ENST00000555259 TRAV19A0A0A6YYK7 116 aa10.4□□□□□ -0.74
SCFD1-215ENST00000555259 SFI1A8K8P3 1242 aa10.4□□□□□ -0.74
SCFD1-215ENST00000555259 PIRO00625 290 aa10.4□□□□□ -0.74
SCFD1-215ENST00000555259 GJB3O75712 270 aa10.4□□□□□ -0.74
SCFD1-215ENST00000555259 KLF8O95600 359 aaPredicted RBP10.4□□□□□ -0.74
SCFD1-215ENST00000555259 MAPTP10636 758 aaKnown RBP10.4□□□□□ -0.74
SCFD1-215ENST00000555259 TIE1P35590 1138 aa10.4□□□□□ -0.74
SCFD1-215ENST00000555259 RPL6Q02878 288 aaKnown RBP10.4□□□□□ -0.74
SCFD1-215ENST00000555259 NBR1Q14596 966 aa10.4□□□□□ -0.74
SCFD1-215ENST00000555259 HSF5Q4G112 596 aaPredicted RBP10.4□□□□□ -0.74
SCFD1-215ENST00000555259 ZC2HC1CQ53FD0 456 aaPredicted RBP10.4□□□□□ -0.74
SCFD1-215ENST00000555259 SDHAF4Q5VUM1 108 aa10.4□□□□□ -0.74
SCFD1-215ENST00000555259 METTL23Q86XA0 190 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms