RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 FAM136AQ96C01 138 aa18.41■□□□□ 0.54
SYNE3-202ENST00000553340 POLR3FQ9H1D9 316 aaPredicted RBP18.41■□□□□ 0.54
SYNE3-202ENST00000553340 ALG13Q9NP73 1137 aaKnown RBP18.41■□□□□ 0.54
SYNE3-202ENST00000553340 PDLIM7Q9NR12 457 aa18.41■□□□□ 0.54
SYNE3-202ENST00000553340 PXMP2Q9NR77 195 aa18.41■□□□□ 0.54
SYNE3-202ENST00000553340 ZNRF3Q9ULT6 936 aa18.41■□□□□ 0.54
SYNE3-202ENST00000553340 AGTPBP1Q9UPW5 1226 aa18.41■□□□□ 0.54
SYNE3-202ENST00000553340 MYH9P35579 1960 aaKnown RBP18.41■□□□□ 0.54
SYNE3-202ENST00000553340 LPXNO60711 386 aa18.41■□□□□ 0.54
SYNE3-202ENST00000553340 TGDSO95455 350 aa18.41■□□□□ 0.54
SYNE3-202ENST00000553340 MT-ND3P03897 115 aa18.41■□□□□ 0.54
SYNE3-202ENST00000553340 TUBP50607 506 aa18.41■□□□□ 0.54
SYNE3-202ENST00000553340 OCRLQ01968 901 aa18.41■□□□□ 0.54
SYNE3-202ENST00000553340 KPNB1Q14974 876 aaKnown RBP18.41■□□□□ 0.54
SYNE3-202ENST00000553340 ACSBG2Q5FVE4 666 aa18.41■□□□□ 0.54
SYNE3-202ENST00000553340 ARHGEF16Q5VV41 709 aa18.41■□□□□ 0.54
SYNE3-202ENST00000553340 CIAPIN1Q6FI81 312 aa18.41■□□□□ 0.54
SYNE3-202ENST00000553340 SKA1Q96BD8 255 aa18.41■□□□□ 0.54
SYNE3-202ENST00000553340 STYXL1Q9Y6J8 313 aa18.41■□□□□ 0.54
SYNE3-202ENST00000553340 TCRBV5S1A1TA0A578 114 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 SPDYE5A6NIY4 337 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 SIGLEC16A6NMB1 481 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 E7ESA3 106 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 TBC1D12O60347 775 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 STBD1O95210 358 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 ASNSP08243 561 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 MMP10P09238 476 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 DYNLT1P63172 113 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 OTUD4Q01804 1114 aaKnown RBP18.4■□□□□ 0.54
SYNE3-202ENST00000553340 SLC34A1Q06495 639 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 SCYL3Q8IZE3 742 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 PDIK1LQ8N165 341 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 ACTL9Q8TC94 416 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 RSAD2Q8WXG1 361 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 STMN2Q93045 179 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 TMEM120AQ9BXJ8 343 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 ZNF341Q9BYN7 854 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 MMADHCQ9H3L0 296 aaPredicted RBP18.4■□□□□ 0.54
SYNE3-202ENST00000553340 SYNCQ9H7C4 482 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 SDAD1Q9NVU7 687 aaKnown RBP eCLIP18.4■□□□□ 0.54
SYNE3-202ENST00000553340 SEPT9Q9UHD8 586 aaPredicted RBP18.4■□□□□ 0.54
SYNE3-202ENST00000553340 KCNG1Q9UIX4 513 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 KRT36O76013 467 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 LSM8O95777 96 aaKnown RBP18.4■□□□□ 0.54
SYNE3-202ENST00000553340 ESRRAP11474 423 aaPredicted RBP18.4■□□□□ 0.54
SYNE3-202ENST00000553340 KRT72Q14CN4 511 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 BBS9Q3SYG4 887 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 THEMIS2Q5TEJ8 643 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 SLC30A9Q6PML9 568 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 CHSY1Q86X52 802 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 TTC13Q8NBP0 860 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 FRMD8P1Q9BZ68 369 aaPredicted RBP18.4■□□□□ 0.54
SYNE3-202ENST00000553340 FBXO6Q9NRD1 293 aaPredicted RBP18.4■□□□□ 0.54
SYNE3-202ENST00000553340 SAE1Q9UBE0 346 aaPredicted RBP18.4■□□□□ 0.54
SYNE3-202ENST00000553340 EFR3BQ9Y2G0 817 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 CNTNAP1P78357 1384 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 ZNF541Q9H0D2 1346 aa18.4■□□□□ 0.54
SYNE3-202ENST00000553340 IQANK1A0A1B0GTG1 560 aa18.39■□□□□ 0.54
SYNE3-202ENST00000553340 CAPN9O14815 690 aa18.39■□□□□ 0.54
SYNE3-202ENST00000553340 PSMG1O95456 288 aa18.39■□□□□ 0.54
SYNE3-202ENST00000553340 GDF10P55107 478 aa18.39■□□□□ 0.54
SYNE3-202ENST00000553340 SARNPP82979 210 aaKnown RBP18.39■□□□□ 0.54
SYNE3-202ENST00000553340 DLGAP5Q15398 846 aa18.39■□□□□ 0.54
SYNE3-202ENST00000553340 SWSAP1Q6NVH7 229 aa18.39■□□□□ 0.54
SYNE3-202ENST00000553340 SEPT12Q8IYM1 358 aa18.39■□□□□ 0.54
SYNE3-202ENST00000553340 NIPA2Q8N8Q9 360 aa18.39■□□□□ 0.54
SYNE3-202ENST00000553340 TMEM35BQ8NCS4 154 aa18.39■□□□□ 0.54
SYNE3-202ENST00000553340 SCG3Q8WXD2 468 aaKnown RBP18.39■□□□□ 0.54
SYNE3-202ENST00000553340 CYTH2Q99418 400 aa18.39■□□□□ 0.54
SYNE3-202ENST00000553340 CGRRF1Q99675 332 aa18.39■□□□□ 0.54
SYNE3-202ENST00000553340 WDR83Q9BRX9 315 aaKnown RBP18.39■□□□□ 0.54
SYNE3-202ENST00000553340 IMPG2Q9BZV3 1241 aa18.39■□□□□ 0.54
SYNE3-202ENST00000553340 KCNK13Q9HB14 408 aa18.39■□□□□ 0.54
SYNE3-202ENST00000553340 SLC38A10Q9HBR0 1119 aa18.39■□□□□ 0.54
SYNE3-202ENST00000553340 CYP26B1Q9NR63 512 aa18.39■□□□□ 0.54
SYNE3-202ENST00000553340 DLGAP2Q9P1A6 1054 aa18.39■□□□□ 0.54
SYNE3-202ENST00000553340 IKBKGQ9Y6K9 419 aa18.39■□□□□ 0.54
SYNE3-202ENST00000553340 SMAPO00193 183 aa18.39■□□□□ 0.53
SYNE3-202ENST00000553340 WDR46O15213 610 aaKnown RBP18.39■□□□□ 0.53
SYNE3-202ENST00000553340 TSHRP16473 764 aa18.39■□□□□ 0.53
SYNE3-202ENST00000553340 SP100P23497 879 aaPredicted RBP18.39■□□□□ 0.53
SYNE3-202ENST00000553340 RPL22P35268 128 aaKnown RBP18.39■□□□□ 0.53
SYNE3-202ENST00000553340 ZNF132P52740 706 aa18.39■□□□□ 0.53
SYNE3-202ENST00000553340 NCOA4Q13772 614 aa18.39■□□□□ 0.53
SYNE3-202ENST00000553340 SLFN12LQ6IEE8 588 aa18.39■□□□□ 0.53
SYNE3-202ENST00000553340 LRRC74BQ6ZQY2 392 aa18.39■□□□□ 0.53
SYNE3-202ENST00000553340 POLNQ7Z5Q5 900 aa18.39■□□□□ 0.53
SYNE3-202ENST00000553340 CDAN1Q8IWY9 1227 aa18.39■□□□□ 0.53
SYNE3-202ENST00000553340 PPFIBP2Q8ND30 876 aa18.39■□□□□ 0.53
SYNE3-202ENST00000553340 TEKT4Q8WW24 435 aa18.39■□□□□ 0.53
SYNE3-202ENST00000553340 ZBTB10Q96DT7 871 aa18.39■□□□□ 0.53
SYNE3-202ENST00000553340 TAS2R1Q9NYW7 299 aa18.39■□□□□ 0.53
SYNE3-202ENST00000553340 LDHAP00338 332 aaKnown RBP18.38■□□□□ 0.53
SYNE3-202ENST00000553340 DLDP09622 509 aaKnown RBP18.38■□□□□ 0.53
SYNE3-202ENST00000553340 DHRS4L1P0CG22 281 aa18.38■□□□□ 0.53
SYNE3-202ENST00000553340 RCN2Q14257 317 aa18.38■□□□□ 0.53
SYNE3-202ENST00000553340 PRKD1Q15139 912 aaPredicted RBP18.38■□□□□ 0.53
SYNE3-202ENST00000553340 GNPTABQ3T906 1256 aa18.38■□□□□ 0.53
SYNE3-202ENST00000553340 RINLQ6ZS11 566 aa18.38■□□□□ 0.53
SYNE3-202ENST00000553340 ARHGAP24Q8N264 748 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms