RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 NOL4O94818 638 aa9.78□□□□□ -0.84
SYNE2-209ENST00000553308 ACAT1P24752 427 aaKnown RBP9.78□□□□□ -0.84
SYNE2-209ENST00000553308 CYP2F1P24903 491 aa9.78□□□□□ -0.84
SYNE2-209ENST00000553308 IFNAR2P48551 515 aa9.78□□□□□ -0.84
SYNE2-209ENST00000553308 SEC13P55735 322 aa9.78□□□□□ -0.84
SYNE2-209ENST00000553308 WNT7BP56706 349 aa9.78□□□□□ -0.84
SYNE2-209ENST00000553308 DDR2Q16832 855 aa9.78□□□□□ -0.84
SYNE2-209ENST00000553308 EML3Q32P44 896 aa9.78□□□□□ -0.84
SYNE2-209ENST00000553308 SV2CQ496J9 727 aa9.78□□□□□ -0.84
SYNE2-209ENST00000553308 ZC2HC1CQ53FD0 456 aaPredicted RBP9.78□□□□□ -0.84
SYNE2-209ENST00000553308 ADALQ6DHV7 355 aa9.78□□□□□ -0.84
SYNE2-209ENST00000553308 MCTP1Q6DN14 999 aa9.78□□□□□ -0.84
SYNE2-209ENST00000553308 ANO7Q6IWH7 933 aa9.78□□□□□ -0.84
SYNE2-209ENST00000553308 CYP2U1Q7Z449 544 aa9.78□□□□□ -0.84
SYNE2-209ENST00000553308 PDCL2Q8N4E4 241 aa9.78□□□□□ -0.84
SYNE2-209ENST00000553308 KCTD17Q8N5Z5 321 aa9.78□□□□□ -0.84
SYNE2-209ENST00000553308 KDF1Q8NAX2 398 aaPredicted RBP9.78□□□□□ -0.84
SYNE2-209ENST00000553308 ATP2A3Q93084 1043 aa9.78□□□□□ -0.84
SYNE2-209ENST00000553308 EXOC4Q96A65 974 aa9.78□□□□□ -0.84
SYNE2-209ENST00000553308 TMEM9BQ9NQ34 198 aa9.78□□□□□ -0.84
SYNE2-209ENST00000553308 BLOC1S4Q9NUP1 217 aa9.78□□□□□ -0.84
SYNE2-209ENST00000553308 AGO2Q9UKV8 859 aaKnown RBP9.78□□□□□ -0.84
SYNE2-209ENST00000553308 CACNA1GO43497 2377 aa9.78□□□□□ -0.84
SYNE2-209ENST00000553308 FRYQ5TBA9 3013 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 TRAV19A0A0A6YYK7 116 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 C2orf78A6NCI8 922 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 SOBPA7XYQ1 873 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 KHNYNO15037 678 aaKnown RBP9.77□□□□□ -0.85
SYNE2-209ENST00000553308 HCRTO43612 131 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 CKMP06732 381 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 USP17L7P0C7H9 530 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 CSRP1P21291 193 aaKnown RBP9.77□□□□□ -0.85
SYNE2-209ENST00000553308 SCP2P22307 547 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 IRX4P78413 519 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 GTF2BQ00403 316 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 TSPY1Q01534 308 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 MCM6Q14566 821 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 NFE2Q16621 373 aaPredicted RBP9.77□□□□□ -0.85
SYNE2-209ENST00000553308 UAP1L1Q3KQV9 507 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 USP39Q53GS9 565 aaKnown RBP9.77□□□□□ -0.85
SYNE2-209ENST00000553308 C2orf27AQ580R0 203 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 RILPL1Q5EBL4 403 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 SCARA3Q6AZY7 606 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 KIAA1211LQ6NV74 962 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 CRELD2Q6UXH1 353 aaPredicted RBP9.77□□□□□ -0.85
SYNE2-209ENST00000553308 RASSF3Q86WH2 238 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 ARL14EPQ8N8R7 260 aaPredicted RBP9.77□□□□□ -0.85
SYNE2-209ENST00000553308 DEFB124Q8NES8 71 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 MDGA1Q8NFP4 955 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 SH3RF2Q8TEC5 729 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 USP33Q8TEY7 942 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 LEO1Q8WVC0 666 aaPredicted RBP9.77□□□□□ -0.85
SYNE2-209ENST00000553308 GATA6Q92908 595 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 TRMT2BQ96GJ1 504 aaKnown RBP9.77□□□□□ -0.85
SYNE2-209ENST00000553308 FAM84AQ96KN4 292 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 ZSCAN31Q96LW9 406 aaPredicted RBP9.77□□□□□ -0.85
SYNE2-209ENST00000553308 ZNF560Q96MR9 790 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 PKMYT1Q99640 499 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 SCNM1Q9BWG6 230 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 LINC00597Q9H2U6 94 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 TMEM206Q9H813 350 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 DDX43Q9NXZ2 648 aaKnown RBP9.77□□□□□ -0.85
SYNE2-209ENST00000553308 GCNT4Q9P109 453 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 UXTQ9UBK9 157 aaPredicted RBP9.77□□□□□ -0.85
SYNE2-209ENST00000553308 L1RE1Q9UN81 338 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 STYXL1Q9Y6J8 313 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 ABCA7Q8IZY2 2146 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 THADAQ6YHU6 1953 aa9.77□□□□□ -0.85
SYNE2-209ENST00000553308 HELZP42694 1942 aaKnown RBP9.76□□□□□ -0.85
SYNE2-209ENST00000553308 ANAPC1Q9H1A4 1944 aa9.76□□□□□ -0.85
SYNE2-209ENST00000553308 K7EQS6 105 aa9.76□□□□□ -0.85
SYNE2-209ENST00000553308 TULP1O00294 542 aaPredicted RBP9.76□□□□□ -0.85
SYNE2-209ENST00000553308 TBCAO75347 108 aaKnown RBP9.76□□□□□ -0.85
SYNE2-209ENST00000553308 KRT18P05783 430 aaKnown RBP9.76□□□□□ -0.85
SYNE2-209ENST00000553308 CEACAM1P13688 526 aa9.76□□□□□ -0.85
SYNE2-209ENST00000553308 HNRNPLP14866 589 aaKnown RBP eCLIP9.76□□□□□ -0.85
SYNE2-209ENST00000553308 PLCG1P19174 1290 aa9.76□□□□□ -0.85
SYNE2-209ENST00000553308 POLR2BP30876 1174 aaKnown RBP9.76□□□□□ -0.85
SYNE2-209ENST00000553308 OPRD1P41143 372 aa9.76□□□□□ -0.85
SYNE2-209ENST00000553308 DHPSP49366 369 aaPredicted RBP9.76□□□□□ -0.85
SYNE2-209ENST00000553308 RPL10AP62906 217 aaKnown RBP9.76□□□□□ -0.85
SYNE2-209ENST00000553308 GAB4Q2WGN9 574 aa9.76□□□□□ -0.85
SYNE2-209ENST00000553308 INTS6LQ5JSJ4 861 aaKnown RBP9.76□□□□□ -0.85
SYNE2-209ENST00000553308 ARL6IP4Q66PJ3 421 aaKnown RBP9.76□□□□□ -0.85
SYNE2-209ENST00000553308 SLFN12LQ6IEE8 588 aa9.76□□□□□ -0.85
SYNE2-209ENST00000553308 OSTM1Q86WC4 334 aa9.76□□□□□ -0.85
SYNE2-209ENST00000553308 TTC30AQ86WT1 665 aa9.76□□□□□ -0.85
SYNE2-209ENST00000553308 SFTPA1Q8IWL2 248 aa9.76□□□□□ -0.85
SYNE2-209ENST00000553308 CCDC33Q8N5R6 958 aa9.76□□□□□ -0.85
SYNE2-209ENST00000553308 PIGKQ92643 395 aa9.76□□□□□ -0.85
SYNE2-209ENST00000553308 RAD54LQ92698 747 aa9.76□□□□□ -0.85
SYNE2-209ENST00000553308 CNOT6LQ96LI5 555 aaKnown RBP9.76□□□□□ -0.85
SYNE2-209ENST00000553308 MYRFLQ96LU7 910 aa9.76□□□□□ -0.85
SYNE2-209ENST00000553308 ABCB6Q9NP58 842 aa9.76□□□□□ -0.85
SYNE2-209ENST00000553308 GTF3C4Q9UKN8 822 aa9.76□□□□□ -0.85
SYNE2-209ENST00000553308 MMP17Q9ULZ9 603 aa9.76□□□□□ -0.85
SYNE2-209ENST00000553308 PTPRDP23468 1912 aa9.76□□□□□ -0.85
SYNE2-209ENST00000553308 FAM208BQ5VWN6 2430 aa9.75□□□□□ -0.85
SYNE2-209ENST00000553308 TNRC6BQ9UPQ9 1833 aaKnown RBP9.75□□□□□ -0.85
SYNE2-209ENST00000553308 TMEM8BA6NDV4 472 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms