RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 DCAF4Q8WV16 495 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 STMN2Q93045 179 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 OPTNQ96CV9 577 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 OXNAD1Q96HP4 312 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-214ENST00000552783 ACAP3Q96P50 834 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 MMP19Q99542 508 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 EBF4Q9BQW3 602 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 TCHPQ9BT92 498 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 PHACTR1Q9C0D0 580 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 PSMC3IPQ9P2W1 217 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-214ENST00000552783 ADAMTS6Q9UKP5 1117 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 PHF24Q9UPV7 400 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 CEP350Q5VT06 3117 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 POLRMTO00411 1230 aaKnown RBP5.09□□□□□ -1.59
LIMA1-214ENST00000552783 TMEM63AO94886 807 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 PROSCO94903 275 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 CDK7P50613 346 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 SLC18A1P54219 525 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 AQP4P55087 323 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 OGDHQ02218 1023 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 CAV1Q03135 178 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 DEUP1Q05D60 604 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 NFX1Q12986 1120 aaKnown RBP5.09□□□□□ -1.59
LIMA1-214ENST00000552783 LSAMPQ13449 338 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 MAMLD1Q13495 774 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 NCOA4Q13772 614 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 SNRNP35Q16560 246 aaKnown RBP5.09□□□□□ -1.59
LIMA1-214ENST00000552783 EFHC2Q5JST6 749 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 FYB2Q5VWT5 728 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 SLC39A4Q6P5W5 647 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 SH2D5Q6ZV89 423 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 SYDE1Q6ZW31 735 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-214ENST00000552783 ILDR2Q71H61 639 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 SV2AQ7L0J3 742 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 MON1BQ7L1V2 547 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 SH3BP5LQ7L8J4 393 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 PRPF39Q86UA1 669 aaKnown RBP5.09□□□□□ -1.59
LIMA1-214ENST00000552783 XXYLT1Q8NBI6 393 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 HIPK4Q8NE63 616 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 LRRN4Q8WUT4 740 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 ZNF516Q92618 1163 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 MASTLQ96GX5 879 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 AGBL1Q96MI9 1066 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 HAPLN3Q96S86 360 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 TEKT3Q9BXF9 490 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 ZNF341Q9BYN7 854 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 TRIM55Q9BYV6 548 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 DNAAF2Q9NVR5 837 aaKnown RBP5.09□□□□□ -1.59
LIMA1-214ENST00000552783 RHBDL2Q9NX52 303 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 ZNF212Q9UDV6 495 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 PACSIN3Q9UKS6 424 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 AFG3L2Q9Y4W6 797 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 HEMK1Q9Y5R4 338 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-214ENST00000552783 SPDYE16A6NNV3 312 aaPredicted RBP5.09□□□□□ -1.6
LIMA1-214ENST00000552783 PRR5-ARHGAP8B1AHC4 643 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 MAGEB3O15480 346 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 UGT1A9O60656 530 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 TROVE2P10155 538 aaKnown RBP eCLIP5.09□□□□□ -1.6
LIMA1-214ENST00000552783 PEX2P28328 305 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 MAGEA10P43363 369 aaPredicted RBP5.09□□□□□ -1.6
LIMA1-214ENST00000552783 GEMIN4P57678 1058 aaKnown RBP5.09□□□□□ -1.6
LIMA1-214ENST00000552783 ARHGAP8P85298 464 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 SLC25A3Q00325 362 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 PLCB3Q01970 1234 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 DSG1Q02413 1049 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 CENPCQ03188 943 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 FAAP100Q0VG06 881 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 UGCGQ16739 394 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 ZCCHC23Q6ZST2 131 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 DPH6Q7L8W6 267 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 MYLK4Q86YV6 388 aaPredicted RBP5.09□□□□□ -1.6
LIMA1-214ENST00000552783 RHPN2Q8IUC4 686 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 ALLCQ8N6M5 410 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 POU5F2Q8N7G0 328 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.09□□□□□ -1.6
LIMA1-214ENST00000552783 FBXO36Q8NEA4 188 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 CFAP61Q8NHU2 1237 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 CPT1BQ92523 772 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 TTC25Q96NG3 672 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 NACC1Q96RE7 527 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 TMEM39BQ9GZU3 492 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 ZWILCHQ9H900 591 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 UGT1A7Q9HAW7 530 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 UGT1A10Q9HAW8 530 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 UGT1A8Q9HAW9 530 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 TMEM165Q9HC07 324 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 TUFT1Q9NNX1 390 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 ZNF277Q9NRM2 450 aaPredicted RBP5.09□□□□□ -1.6
LIMA1-214ENST00000552783 COL24A1Q17RW2 1714 aa5.09□□□□□ -1.6
LIMA1-214ENST00000552783 PTPRJQ12913 1337 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 A0A088AWK7 358 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 A0A1B0GTW7 788 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 HNRNPDLO14979 420 aaKnown RBP5.08□□□□□ -1.6
LIMA1-214ENST00000552783 DNAJC6O75061 913 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 PDE5AO76074 875 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 ZWINTO95229 277 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 DHRS4L1P0CG22 281 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 TNNI1P19237 187 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 RFX1P22670 979 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 CRABP2P29373 138 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms