RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 DHRS4Q9BTZ2 278 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 RAVER2Q9HCJ3 691 aaKnown RBP5.7□□□□□ -1.5
LIMA1-212ENST00000552491 PSMC3IPQ9P2W1 217 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-212ENST00000552491 HERC5Q9UII4 1024 aaKnown RBP5.7□□□□□ -1.5
LIMA1-212ENST00000552491 LNPEPQ9UIQ6 1025 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 NUB1Q9Y5A7 615 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 PCDHB4Q9Y5E5 795 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 hCG_1818297A0A087WSY0 165 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 CFAP69A5D8W1 941 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 E5RJQ4 531 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 GSC2O15499 205 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 PLA2G6O60733 806 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 ZBED4O75132 1171 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 ZC3H11AO75152 810 aaKnown RBP eCLIP5.7□□□□□ -1.5
LIMA1-212ENST00000552491 TBX10O75333 385 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 TMEM63AO94886 807 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 ACADSP16219 412 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 COL9A1P20849 921 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 SERPINB3P29508 390 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 CDKN2BP42772 138 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 GEMIN4P57678 1058 aaKnown RBP5.7□□□□□ -1.5
LIMA1-212ENST00000552491 BPIFB4P59827 614 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 RPS6P62753 249 aaKnown RBP5.7□□□□□ -1.5
LIMA1-212ENST00000552491 DYNLT1P63172 113 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 KPNB1Q14974 876 aaKnown RBP5.7□□□□□ -1.5
LIMA1-212ENST00000552491 RASA2Q15283 850 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 RCN1Q15293 331 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 HSF5Q4G112 596 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-212ENST00000552491 SEZ6Q53EL9 994 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 LIN9Q5TKA1 542 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 POTEAQ6S8J7 498 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 RINLQ6ZS11 566 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 FAM160B2Q86V87 743 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 RCOR2Q8IZ40 523 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 BANPQ8N9N5 519 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 RBBP8NLQ8NC74 664 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-212ENST00000552491 OR5B17Q8NGF7 314 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 FBXO27Q8NI29 283 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 DCAKDQ8WVC6 231 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 DNAJC9Q8WXX5 260 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 CEP170P1Q96L14 293 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 MCEEQ96PE7 176 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 PAFAH2Q99487 392 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 TMEM39BQ9GZU3 492 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 PPCSQ9HAB8 311 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 MRPL47Q9HD33 250 aaKnown RBP5.7□□□□□ -1.5
LIMA1-212ENST00000552491 PDLIM7Q9NR12 457 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 ARHGEF4Q9NR80 690 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 ANKEF1Q9NU02 776 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 TBC1D22BQ9NU19 505 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 HEY2Q9UBP5 337 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 TJP2Q9UDY2 1190 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 SLC24A2Q9UI40 661 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 FEM1BQ9UK73 627 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 ZNRF3Q9ULT6 936 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 C3orf70A6NLC5 250 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-212ENST00000552491 WDR64B1ANS9 1081 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 SGK1O00141 431 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 ABLIM1O14639 778 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 HNRNPCL1O60812 293 aaKnown RBP5.69□□□□□ -1.5
LIMA1-212ENST00000552491 TJP3O95049 919 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 LMNAP02545 664 aaKnown RBP5.69□□□□□ -1.5
LIMA1-212ENST00000552491 GARTP22102 1010 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 MMP8P22894 467 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 SP100P23497 879 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-212ENST00000552491 RXRBP28702 533 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 RFC5P40937 340 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 CETN2P41208 172 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 ENPEPQ07075 957 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 PSMD6Q15008 389 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 HIF1AQ16665 826 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 WDR44Q5JSH3 913 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 SNX30Q5VWJ9 437 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 FOXB2Q5VYV0 432 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 CES4AQ5XG92 561 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 TMEM154Q6P9G4 183 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 C3orf62Q6ZUJ4 267 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 SH2D5Q6ZV89 423 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 CENPUQ71F23 418 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 KBTBD2Q8IY47 623 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 KIAA0319LQ8IZA0 1049 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 WDTC1Q8N5D0 677 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 ARFGAP1Q8N6T3 406 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 NAT8LQ8N9F0 302 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 CFAP61Q8NHU2 1237 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 SLC35B2Q8TB61 432 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 ZNF398Q8TD17 642 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 DTX3LQ8TDB6 740 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 ZNF606Q8WXB4 792 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 NKD2Q969F2 451 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-212ENST00000552491 BICD1Q96G01 975 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 VCPIP1Q96JH7 1222 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 SERAC1Q96JX3 654 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 ZFRQ96KR1 1074 aaKnown RBP5.69□□□□□ -1.5
LIMA1-212ENST00000552491 SENP7Q9BQF6 1050 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 TMX4Q9H1E5 349 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-212ENST00000552491 DCLRE1BQ9H816 532 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 PCDH9Q9HC56 1237 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 SAR1AQ9NR31 198 aa5.69□□□□□ -1.5
LIMA1-212ENST00000552491 TAS2R1Q9NYW7 299 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms