RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 PLEKP08567 350 aaPredicted RBP10.16□□□□□ -0.78
LIMA1-211ENST00000552338 PDGFRBP09619 1106 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 FAM228BP0C875 321 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 SKILP12757 684 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 MYOGP15173 224 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 TNFAIP3P21580 790 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 CYLC1P35663 651 aaPredicted RBP10.16□□□□□ -0.78
LIMA1-211ENST00000552338 EIF4A3P38919 411 aaKnown RBP10.16□□□□□ -0.78
LIMA1-211ENST00000552338 USP8P40818 1118 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 GABRB2P47870 512 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 NOMO3P69849 1222 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 TSPY1Q01534 308 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 TCEAL1Q15170 157 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 PTPN14Q15678 1187 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 CTXN3Q4LDR2 81 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 ZNF394Q53GI3 561 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 LILRA6Q6PI73 481 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 VSTM1Q6UX27 236 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 RSPO2Q6UXX9 243 aaPredicted RBP10.16□□□□□ -0.78
LIMA1-211ENST00000552338 RAD9BQ6WBX8 426 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 C4orf50Q6ZRC1 276 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 PHF13Q86YI8 300 aaPredicted RBP10.16□□□□□ -0.78
LIMA1-211ENST00000552338 MRPL43Q8N983 215 aaKnown RBP10.16□□□□□ -0.78
LIMA1-211ENST00000552338 C12orf29Q8N999 325 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 FBXO22Q8NEZ5 403 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 ZNF461Q8TAF7 563 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 SPPL2BQ8TCT7 592 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 POF1BQ8WVV4 589 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 KCTD13Q8WZ19 329 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 PCED1BQ96HM7 432 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 HSFY1Q96LI6 401 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 PCDHB18PQ96TA0 734 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 C17orf80Q9BSJ5 609 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 DUSP16Q9BY84 665 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 B3GNT5Q9BYG0 378 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 ACP6Q9NPH0 428 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 MRPL17Q9NRX2 175 aaKnown RBP10.16□□□□□ -0.78
LIMA1-211ENST00000552338 LMCD1Q9NZU5 365 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 ADAMTS1Q9UHI8 967 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 GTF3C4Q9UKN8 822 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 TSPAN16Q9UKR8 245 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 PLXNA3P51805 1871 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 DENND4CQ5VZ89 1909 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 MYO9BQ13459 2157 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 TNRC18O15417 2968 aaPredicted RBP10.15□□□□□ -0.78
LIMA1-211ENST00000552338 SOWAHDA6NJG2 315 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 ZNF263O14978 683 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 PJA2O43164 708 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 THAP12O43422 761 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 HCRTO43612 131 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 ATP2C2O75185 946 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 RTN2O75298 545 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 VNN2O95498 520 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 URODP06132 367 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 ATF2P15336 505 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 POU3F3P20264 500 aaPredicted RBP10.15□□□□□ -0.78
LIMA1-211ENST00000552338 BRD2P25440 801 aaKnown RBP10.15□□□□□ -0.78
LIMA1-211ENST00000552338 DNAJB1P25685 340 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 DNAJB2P25686 324 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 CTNNB1P35222 781 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 PBX2P40425 430 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 PLA2G4AP47712 749 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 KIF11P52732 1056 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 BCAT1P54687 386 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 BST2Q10589 180 aaKnown RBP10.15□□□□□ -0.78
LIMA1-211ENST00000552338 PTP4A2Q12974 167 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 PSMD5Q16401 504 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 CLEC16AQ2KHT3 1053 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 TDRD12Q587J7 1177 aaKnown RBP10.15□□□□□ -0.78
LIMA1-211ENST00000552338 RAB41Q5JT25 222 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 ACAD10Q6JQN1 1059 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 ALKBH5Q6P6C2 394 aaKnown RBP10.15□□□□□ -0.78
LIMA1-211ENST00000552338 TMEM110Q86TL2 294 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 TTC30AQ86WT1 665 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 TMEM35BQ8NCS4 154 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 HDAC7Q8WUI4 952 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 SLC20A1Q8WUM9 679 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 RIN2Q8WYP3 895 aaPredicted RBP10.15□□□□□ -0.78
LIMA1-211ENST00000552338 TMEM209Q96SK2 561 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 SLC4A5Q9BY07 1137 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 TLR9Q9NR96 1032 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 TMLHEQ9NVH6 421 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 IL37Q9NZH6 218 aa10.15□□□□□ -0.78
LIMA1-211ENST00000552338 AFF4Q9UHB7 1163 aaKnown RBP10.15□□□□□ -0.78
LIMA1-211ENST00000552338 NCANO14594 1321 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 TCRBV5S1A1TA0A578 114 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 WDR27A2RRH5 827 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 MTMR11A4FU01 709 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 ANKRD62A6NC57 917 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 C2orf71A6NGG8 1288 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 BTNL10A8MVZ5 291 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 HHLA1C9JL84 531 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 XPO1O14980 1071 aaKnown RBP10.14□□□□□ -0.79
LIMA1-211ENST00000552338 GRM6O15303 877 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 MICAL2O94851 1124 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 PTMAP06454 111 aaKnown RBP10.14□□□□□ -0.79
LIMA1-211ENST00000552338 CFHP08603 1231 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 NPR3P17342 541 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 MMP8P22894 467 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 ACAT1P24752 427 aaKnown RBP10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms