RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	EEPD1	Q7L9B9	569 aa		2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	C1QL2	Q7Z5L3	287 aa		2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	DPP9	Q86TI2	863 aa		2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	CCAR1	Q8IX12	1150 aa	Known RBP	2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	WDR48	Q8TAF3	677 aa		2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	ZNF384	Q8TF68	577 aa		2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	ARNTL2	Q8WYA1	636 aa		2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	ATOH1	Q92858	354 aa	Predicted RBP	2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	LPP	Q93052	612 aa		2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	NKD2	Q969F2	451 aa	Predicted RBP	2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	KAZALD1	Q96I82	304 aa		2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	AARSD1	Q9BTE6	412 aa	Known RBP	2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	PAGR1	Q9BTK6	254 aa		2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	MOV10L1	Q9BXT6	1211 aa	Known RBP	2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	SLC29A3	Q9BZD2	475 aa		2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	SPATC1L	Q9H0A9	340 aa		2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	SLC6A15	Q9H2J7	730 aa		2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	DHX36	Q9H2U1	1008 aa	Known RBP	2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	CNNM1	Q9NRU3	951 aa		2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	CTNNA3	Q9UI47	895 aa		2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	ZBTB21	Q9ULJ3	1066 aa		2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	ADAMTS5	Q9UNA0	930 aa		2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	MROH7-TTC4	A0A0A0MT08	1334 aa		2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	GRIN2D	O15399	1336 aa		2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	UMODL1	Q5DID0	1318 aa		2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	SIPA1L1	O43166	1804 aa		2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	GBF1	Q92538	1859 aa		2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	GCN1	Q92616	2671 aa	Known RBP	2.81	□□□□□ -1.96
PTCH1-223	ENST00000551623	ZZEF1	O43149	2961 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	KIF28P	B7ZC32	967 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	MAN2B1	O00754	1011 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	KCNK3	O14649	394 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	ADCY6	O43306	1168 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	MBTPS2	O43462	519 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	MFAP3L	O75121	409 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	GJB5	O95377	273 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	MPIG6B	O95866	241 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	IFIT1	P09914	478 aa	Known RBP	2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	FGFR1	P11362	822 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	PABPC1	P11940	636 aa	Known RBP	2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	ACTN1	P12814	892 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	LAG3	P18627	525 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	ICAM3	P32942	547 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	CHAF1A	Q13111	956 aa	Predicted RBP	2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	SEC23A	Q15436	765 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	PRAMEF19	Q5SWL8	479 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	FKBP15	Q5T1M5	1219 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	BEND3	Q5T5X7	828 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	ANO1	Q5XXA6	986 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	NAIF1	Q69YI7	327 aa	Predicted RBP	2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	TATDN1	Q6P1N9	297 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	LRSAM1	Q6UWE0	723 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	VPS37D	Q86XT2	251 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	FOXP4	Q8IVH2	680 aa	Predicted RBP	2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	ELOA2	Q8IYF1	753 aa	Predicted RBP	2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	NLGN4X	Q8N0W4	816 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	ADSSL1	Q8N142	457 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	ZGPAT	Q8N5A5	531 aa	Known RBP	2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	C8orf58	Q8NAV2	365 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	SMRP1	Q8NCR6	262 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	SIMC1	Q8NDZ2	872 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	SPATA3	Q8NHX4	192 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	GDPD5	Q8WTR4	605 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	DCAF4	Q8WV16	495 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	DNAAF4	Q8WXU2	420 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	LPIN2	Q92539	896 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	MSLNL	Q96KJ4	702 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	TGS1	Q96RS0	853 aa	Known RBP	2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	GPHA2	Q96T91	129 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	C1QTNF7	Q9BXJ2	289 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	AMN	Q9BXJ7	453 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	PUS3	Q9BZE2	481 aa	Known RBP	2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	SIL1	Q9H173	461 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	EPN3	Q9H201	632 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	OR10A5	Q9H207	317 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	SERHL2	Q9H4I8	314 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	SYBU	Q9NX95	663 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	PI4KB	Q9UBF8	816 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	CBLC	Q9ULV8	474 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	SORCS3	Q9UPU3	1222 aa		2.8	□□□□□ -1.96
PTCH1-223	ENST00000551623	COL11A1	P12107	1806 aa	Predicted RBP	2.79	□□□□□ -1.96
PTCH1-223	ENST00000551623	ATAD5	Q96QE3	1844 aa		2.79	□□□□□ -1.96
PTCH1-223	ENST00000551623	BPTF	Q12830	3046 aa		2.79	□□□□□ -1.96
PTCH1-223	ENST00000551623	HELZ2	Q9BYK8	2649 aa	Known RBP	2.79	□□□□□ -1.96
PTCH1-223	ENST00000551623	SPEG	Q15772	3267 aa		2.79	□□□□□ -1.96
PTCH1-223	ENST00000551623	LCHN	A4D1U4	455 aa		2.79	□□□□□ -1.96
PTCH1-223	ENST00000551623	LINC01553	A4QN01	128 aa		2.79	□□□□□ -1.96
PTCH1-223	ENST00000551623	C5orf67	F2Z3F1	127 aa		2.79	□□□□□ -1.96
PTCH1-223	ENST00000551623		H3BNC9	293 aa		2.79	□□□□□ -1.96
PTCH1-223	ENST00000551623		H3BQ06	376 aa	Predicted RBP	2.79	□□□□□ -1.96
PTCH1-223	ENST00000551623	GRM8	O00222	908 aa		2.79	□□□□□ -1.96
PTCH1-223	ENST00000551623	ATP2A1	O14983	1001 aa		2.79	□□□□□ -1.96
PTCH1-223	ENST00000551623	EFCAB14	O75071	495 aa		2.79	□□□□□ -1.96
PTCH1-223	ENST00000551623	FRAT2	O75474	233 aa	Predicted RBP	2.79	□□□□□ -1.96
PTCH1-223	ENST00000551623	PARN	O95453	639 aa	Known RBP	2.79	□□□□□ -1.96
PTCH1-223	ENST00000551623	SLC25A27	O95847	323 aa		2.79	□□□□□ -1.96
PTCH1-223	ENST00000551623	SNAI1	O95863	264 aa	Predicted RBP	2.79	□□□□□ -1.96
PTCH1-223	ENST00000551623	CXCL10	P02778	98 aa		2.79	□□□□□ -1.96
PTCH1-223	ENST00000551623	SUPT20HL2	P0C7V6	817 aa		2.79	□□□□□ -1.96
PTCH1-223	ENST00000551623	FCER1A	P12319	257 aa		2.79	□□□□□ -1.96

Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms