RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 HDAC9Q9UKV0 1011 aa5.86□□□□□ -1.47
LIMA1-205ENST00000550592 SHOC2Q9UQ13 582 aa5.86□□□□□ -1.47
LIMA1-205ENST00000550592 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.86□□□□□ -1.47
LIMA1-205ENST00000550592 WIZO95785 1651 aa5.85□□□□□ -1.47
LIMA1-205ENST00000550592 PCF11O94913 1555 aaKnown RBP5.85□□□□□ -1.47
LIMA1-205ENST00000550592 PRAMEF33A0A0G2JMD5 474 aa5.85□□□□□ -1.47
LIMA1-205ENST00000550592 GAGE12BA1L429 117 aa5.85□□□□□ -1.47
LIMA1-205ENST00000550592 GAGE12HA6NDE8 117 aa5.85□□□□□ -1.47
LIMA1-205ENST00000550592 MARCH11A6NNE9 402 aa5.85□□□□□ -1.47
LIMA1-205ENST00000550592 FFAR2O15552 330 aa5.85□□□□□ -1.47
LIMA1-205ENST00000550592 KCNQ3O43525 872 aa5.85□□□□□ -1.47
LIMA1-205ENST00000550592 PRAMEF10O60809 474 aa5.85□□□□□ -1.47
LIMA1-205ENST00000550592 MYL4P12829 197 aa5.85□□□□□ -1.47
LIMA1-205ENST00000550592 ACVR2AP27037 513 aa5.85□□□□□ -1.47
LIMA1-205ENST00000550592 HSPA2P54652 639 aa5.85□□□□□ -1.47
LIMA1-205ENST00000550592 DYRK1AQ13627 763 aa5.85□□□□□ -1.47
LIMA1-205ENST00000550592 ARHGEF7Q14155 803 aa5.85□□□□□ -1.47
LIMA1-205ENST00000550592 R3HDM1Q15032 1099 aaKnown RBP5.85□□□□□ -1.47
LIMA1-205ENST00000550592 INSCQ1MX18 579 aa5.85□□□□□ -1.47
LIMA1-205ENST00000550592 TUBB8Q3ZCM7 444 aa5.85□□□□□ -1.47
LIMA1-205ENST00000550592 INO80DQ53TQ3 878 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-205ENST00000550592 FCRL6Q6DN72 434 aa5.85□□□□□ -1.47
LIMA1-205ENST00000550592 PGBD2Q6P3X8 592 aa5.85□□□□□ -1.47
LIMA1-205ENST00000550592 CLNKQ7Z7G1 428 aa5.85□□□□□ -1.47
LIMA1-205ENST00000550592 KRTAP1-3Q8IUG1 177 aa5.85□□□□□ -1.47
LIMA1-205ENST00000550592 CPT1CQ8TCG5 803 aa5.85□□□□□ -1.47
LIMA1-205ENST00000550592 ZNF384Q8TF68 577 aa5.85□□□□□ -1.47
LIMA1-205ENST00000550592 BOD1Q96IK1 185 aa5.85□□□□□ -1.47
LIMA1-205ENST00000550592 SMOC2Q9H3U7 446 aa5.85□□□□□ -1.47
LIMA1-205ENST00000550592 TM7SF3Q9NS93 570 aa5.85□□□□□ -1.47
LIMA1-205ENST00000550592 ZBTB32Q9Y2Y4 487 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-205ENST00000550592 TESMINQ9Y4I5 508 aa5.85□□□□□ -1.47
LIMA1-205ENST00000550592 PTPRMP28827 1452 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 PRG4Q92954 1404 aaPredicted RBP5.84□□□□□ -1.47
LIMA1-205ENST00000550592 A0A087WZ62 844 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 MYADML2A6NDP7 307 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 K7ESM1 405 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 RNASET2O00584 256 aaKnown RBP5.84□□□□□ -1.47
LIMA1-205ENST00000550592 PLSCR1O15162 318 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 ERN1O75460 977 aaKnown RBP5.84□□□□□ -1.47
LIMA1-205ENST00000550592 CHRM3P20309 590 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 LRPAP1P30533 357 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 PXNP49023 591 aaPredicted RBP5.84□□□□□ -1.47
LIMA1-205ENST00000550592 ALDH9A1P49189 494 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 ZNF134P52741 427 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 LOXL3P58215 753 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 LILRA4P59901 499 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 FAM189BP81408 668 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 PLP2Q04941 152 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 TRIM14Q14142 442 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 STARD3Q14849 445 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 PUM3Q15397 648 aaKnown RBP5.84□□□□□ -1.47
LIMA1-205ENST00000550592 MGAT5BQ3V5L5 792 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 RRAGBQ5VZM2 374 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 PLAG1Q6DJT9 500 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 ZNF585AQ6P3V2 769 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 LAYNQ6UX15 382 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 ZNF280BQ86YH2 543 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 ZNF527Q8NB42 609 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 CHST13Q8NET6 341 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 MAGEB5Q9BZ81 275 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 KLC2Q9H0B6 622 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 ZNF703Q9H7S9 590 aaPredicted RBP5.84□□□□□ -1.47
LIMA1-205ENST00000550592 TMEM74BQ9NUR3 256 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 DKK4Q9UBT3 224 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 TBC1D30Q9Y2I9 924 aa5.84□□□□□ -1.47
LIMA1-205ENST00000550592 MTO1Q9Y2Z2 717 aaKnown RBP5.84□□□□□ -1.47
LIMA1-205ENST00000550592 GOLGA6L3A6NEY3 463 aa5.83□□□□□ -1.48
LIMA1-205ENST00000550592 RAB27BO00194 218 aa5.83□□□□□ -1.48
LIMA1-205ENST00000550592 ZFPL1O95159 310 aa5.83□□□□□ -1.48
LIMA1-205ENST00000550592 ITGALP20701 1170 aa5.83□□□□□ -1.48
LIMA1-205ENST00000550592 GABRB3P28472 473 aa5.83□□□□□ -1.48
LIMA1-205ENST00000550592 HALP42357 657 aa5.83□□□□□ -1.48
LIMA1-205ENST00000550592 CPT1AP50416 773 aa5.83□□□□□ -1.48
LIMA1-205ENST00000550592 DGKEP52429 567 aa5.83□□□□□ -1.48
LIMA1-205ENST00000550592 COPAP53621 1224 aa5.83□□□□□ -1.48
LIMA1-205ENST00000550592 RPS7P62081 194 aaKnown RBP5.83□□□□□ -1.48
LIMA1-205ENST00000550592 CXADRP78310 365 aa5.83□□□□□ -1.48
LIMA1-205ENST00000550592 MC2RQ01718 297 aa5.83□□□□□ -1.48
LIMA1-205ENST00000550592 SATB1Q01826 763 aa5.83□□□□□ -1.48
LIMA1-205ENST00000550592 ICA1Q05084 483 aa5.83□□□□□ -1.48
LIMA1-205ENST00000550592 FSTL1Q12841 308 aa5.83□□□□□ -1.48
LIMA1-205ENST00000550592 HLXQ14774 488 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-205ENST00000550592 PDCD2Q16342 344 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-205ENST00000550592 CYP2A13Q16696 494 aa5.83□□□□□ -1.48
LIMA1-205ENST00000550592 ZIK1Q3SY52 487 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-205ENST00000550592 PRR16Q569H4 304 aa5.83□□□□□ -1.48
LIMA1-205ENST00000550592 MICALCLQ6ZW33 695 aa5.83□□□□□ -1.48
LIMA1-205ENST00000550592 NKAPQ8N5F7 415 aaKnown RBP5.83□□□□□ -1.48
LIMA1-205ENST00000550592 NACC2Q96BF6 587 aa5.83□□□□□ -1.48
LIMA1-205ENST00000550592 LRRC46Q96FV0 321 aa5.83□□□□□ -1.48
LIMA1-205ENST00000550592 PTDSS2Q9BVG9 487 aa5.83□□□□□ -1.48
LIMA1-205ENST00000550592 FAM83DQ9H4H8 585 aa5.83□□□□□ -1.48
LIMA1-205ENST00000550592 ZNF768Q9H5H4 540 aaKnown RBP5.83□□□□□ -1.48
LIMA1-205ENST00000550592 AKIP1Q9NQ31 210 aa5.83□□□□□ -1.48
LIMA1-205ENST00000550592 NECTIN3Q9NQS3 549 aa5.83□□□□□ -1.48
LIMA1-205ENST00000550592 DNMT3BQ9UBC3 853 aaKnown RBP5.83□□□□□ -1.48
LIMA1-205ENST00000550592 SLC39A10Q9ULF5 831 aa5.83□□□□□ -1.48
LIMA1-205ENST00000550592 MAGED2Q9UNF1 606 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-205ENST00000550592 hCG_1642624A0A1W2PR95 340 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms