RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 ARID3BQ8IVW6 561 aaPredicted RBP8.24□□□□□ -1.09
NEK3-201ENST00000550331 YAF2Q8IY57 180 aa8.24□□□□□ -1.09
NEK3-201ENST00000550331 CELF5Q8N6W0 485 aaKnown RBP8.24□□□□□ -1.09
NEK3-201ENST00000550331 KRI1Q8N9T8 703 aaKnown RBP8.24□□□□□ -1.09
NEK3-201ENST00000550331 ATAD1Q8NBU5 361 aa8.24□□□□□ -1.09
NEK3-201ENST00000550331 OR10T2Q8NGX3 314 aa8.24□□□□□ -1.09
NEK3-201ENST00000550331 C2orf15Q8WU43 125 aaKnown RBP8.24□□□□□ -1.09
NEK3-201ENST00000550331 LARP4BQ92615 738 aaKnown RBP8.24□□□□□ -1.09
NEK3-201ENST00000550331 HVCN1Q96D96 273 aa8.24□□□□□ -1.09
NEK3-201ENST00000550331 RSPRY1Q96DX4 576 aa8.24□□□□□ -1.09
NEK3-201ENST00000550331 MKNK1Q9BUB5 465 aa8.24□□□□□ -1.09
NEK3-201ENST00000550331 CCSER1Q9C0I3 900 aa8.24□□□□□ -1.09
NEK3-201ENST00000550331 ZCWPW1Q9H0M4 648 aa8.24□□□□□ -1.09
NEK3-201ENST00000550331 ZHX3Q9H4I2 956 aa8.24□□□□□ -1.09
NEK3-201ENST00000550331 TASP1Q9H6P5 420 aa8.24□□□□□ -1.09
NEK3-201ENST00000550331 UPF2Q9HAU5 1272 aaKnown RBP8.24□□□□□ -1.09
NEK3-201ENST00000550331 ZMYM5Q9UJ78 669 aa8.24□□□□□ -1.09
NEK3-201ENST00000550331 GREB1Q4ZG55 1949 aa8.24□□□□□ -1.09
NEK3-201ENST00000550331 FASNP49327 2511 aaKnown RBP8.24□□□□□ -1.09
NEK3-201ENST00000550331 TICRRQ7Z2Z1 1910 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 ZFYVE26Q68DK2 2539 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 MYBPHLA2RUH7 354 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 SLC38A8A6NNN8 435 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 ANKRD63C9JTQ0 380 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 CYB561D2O14569 222 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 PPEF2O14830 753 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 LRP3O75074 770 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 PROCP04070 461 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 RETP07949 1114 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 ATF6P18850 670 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 GABRR2P28476 465 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 CDC25CP30307 473 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 NMT1P30419 496 aaKnown RBP8.23□□□□□ -1.09
NEK3-201ENST00000550331 CTHP32929 405 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 DDIT3P35638 169 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 CXCL12P48061 93 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 ACOT2P49753 483 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 TAF6P49848 677 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 KPNA1P52294 538 aaPredicted RBP8.23□□□□□ -1.09
NEK3-201ENST00000550331 GRIN1Q05586 938 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 GAS6Q14393 721 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 SF3A1Q15459 793 aaKnown RBP8.23□□□□□ -1.09
NEK3-201ENST00000550331 MGAT5BQ3V5L5 792 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 SLC39A12Q504Y0 691 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 ARHGAP29Q52LW3 1261 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 DGKKQ5KSL6 1271 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 STXBP5Q5T5C0 1151 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 GPR158Q5T848 1215 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 PRR23CQ6ZRP0 262 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 GAREM2Q75VX8 874 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 NT5DC4Q86YG4 428 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 THEM5Q8N1Q8 247 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 SYNPOQ8N3V7 929 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 SPEM1Q8N4L4 309 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 TTC9BQ8N6N2 239 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 GALNT6Q8NCL4 622 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 SPPL2BQ8TCT7 592 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 WHAMMQ8TF30 809 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 ZNF560Q96MR9 790 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 GCNAQ96QF7 691 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 TMEM209Q96SK2 561 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 SEPT5Q99719 369 aaPredicted RBP8.23□□□□□ -1.09
NEK3-201ENST00000550331 KRTAP4-12Q9BQ66 201 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 ATXN3LQ9H3M9 355 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 SEL1LQ9UBV2 794 aa8.23□□□□□ -1.09
NEK3-201ENST00000550331 AGO2Q9UKV8 859 aaKnown RBP8.23□□□□□ -1.09
NEK3-201ENST00000550331 PDCD11Q14690 1871 aaKnown RBP8.23□□□□□ -1.09
NEK3-201ENST00000550331 ANKRD11Q6UB99 2663 aaPredicted RBP8.23□□□□□ -1.09
NEK3-201ENST00000550331 KPNA7A9QM74 516 aa8.22□□□□□ -1.09
NEK3-201ENST00000550331 SPECC1L-ADORA2AF8WAN1 911 aa8.22□□□□□ -1.09
NEK3-201ENST00000550331 SOAT2O75908 522 aa8.22□□□□□ -1.09
NEK3-201ENST00000550331 IL18RAPO95256 599 aa8.22□□□□□ -1.09
NEK3-201ENST00000550331 CNR2P34972 360 aa8.22□□□□□ -1.09
NEK3-201ENST00000550331 PNPLA4P41247 253 aa8.22□□□□□ -1.09
NEK3-201ENST00000550331 WDR4P57081 412 aaKnown RBP8.22□□□□□ -1.09
NEK3-201ENST00000550331 SATB1Q01826 763 aa8.22□□□□□ -1.09
NEK3-201ENST00000550331 POSTNQ15063 836 aa8.22□□□□□ -1.09
NEK3-201ENST00000550331 CSRP2Q16527 193 aa8.22□□□□□ -1.09
NEK3-201ENST00000550331 SV2CQ496J9 727 aa8.22□□□□□ -1.09
NEK3-201ENST00000550331 ZC2HC1CQ53FD0 456 aaPredicted RBP8.22□□□□□ -1.09
NEK3-201ENST00000550331 IL31Q6EBC2 164 aa8.22□□□□□ -1.09
NEK3-201ENST00000550331 ZNF720Q7Z2F6 126 aa8.22□□□□□ -1.09
NEK3-201ENST00000550331 SFR1Q86XK3 245 aa8.22□□□□□ -1.09
NEK3-201ENST00000550331 FAM200AQ8TCP9 573 aa8.22□□□□□ -1.09
NEK3-201ENST00000550331 BPIFB1Q8TDL5 484 aa8.22□□□□□ -1.09
NEK3-201ENST00000550331 POMGNT1Q8WZA1 660 aa8.22□□□□□ -1.09
NEK3-201ENST00000550331 DDX1Q92499 740 aaKnown RBP8.22□□□□□ -1.09
NEK3-201ENST00000550331 LRRC3BQ96PB8 259 aa8.22□□□□□ -1.09
NEK3-201ENST00000550331 PYM1Q9BRP8 204 aaKnown RBP8.22□□□□□ -1.09
NEK3-201ENST00000550331 STRA6Q9BX79 667 aa8.22□□□□□ -1.09
NEK3-201ENST00000550331 SEMA4GQ9NTN9 838 aa8.22□□□□□ -1.09
NEK3-201ENST00000550331 DPP3Q9NY33 737 aa8.22□□□□□ -1.09
NEK3-201ENST00000550331 CCDC39Q9UFE4 941 aa8.22□□□□□ -1.09
NEK3-201ENST00000550331 EXOC7Q9UPT5 735 aa8.22□□□□□ -1.09
NEK3-201ENST00000550331 ASPMQ8IZT6 3477 aa8.22□□□□□ -1.09
NEK3-201ENST00000550331 FRYQ5TBA9 3013 aa8.21□□□□□ -1.09
NEK3-201ENST00000550331 TISP43B9A030 160 aa8.21□□□□□ -1.1
NEK3-201ENST00000550331 K7ESF4 209 aa8.21□□□□□ -1.1
NEK3-201ENST00000550331 PRAMEF12O95522 483 aa8.21□□□□□ -1.1
NEK3-201ENST00000550331 HAPLN1P10915 354 aaPredicted RBP8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms