RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 ADCY7P51828 1080 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 NAPAP54920 295 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 C19orf57Q0VDD7 668 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 POU4F3Q15319 338 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 TARBP2Q15633 366 aaKnown RBP7.23□□□□□ -1.25
LIMA1-204ENST00000549064 JAKMIP3Q5VZ66 844 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 VHLLQ6RSH7 139 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 UNC5AQ6ZN44 842 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 HDXQ7Z353 690 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 ZNF410Q86VK4 478 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 MB21D2Q8IYB1 491 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-204ENST00000549064 SPEM1Q8N4L4 309 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 NCOA7Q8NI08 942 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 HASPINQ8TF76 798 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 TTC9Q92623 222 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 ELSPBP1Q96BH3 223 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 MAP3K14Q99558 947 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 IER2Q9BTL4 223 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 COLEC11Q9BWP8 271 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 APOL6Q9BWW8 343 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 EIF2AQ9BY44 585 aaKnown RBP7.23□□□□□ -1.25
LIMA1-204ENST00000549064 INO80BQ9C086 356 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-204ENST00000549064 NRSN2Q9GZP1 204 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 SOX17Q9H6I2 414 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-204ENST00000549064 MINDY3Q9H8M7 445 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 IFT122Q9HBG6 1241 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 METTL14Q9HCE5 456 aaKnown RBP7.23□□□□□ -1.25
LIMA1-204ENST00000549064 GMIPQ9P107 970 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 SUCLA2Q9P2R7 463 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-204ENST00000549064 KLHL3Q9UH77 587 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 ADAM28Q9UKQ2 775 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 MRPS23Q9Y3D9 190 aaKnown RBP7.23□□□□□ -1.25
LIMA1-204ENST00000549064 IPPQ9Y573 584 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 NUP205Q92621 2012 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 NCANO14594 1321 aa7.23□□□□□ -1.25
LIMA1-204ENST00000549064 ELOA3CA0A087WX78 387 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-204ENST00000549064 IGKV6-21A0A0C4DH24 114 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 SMCO2A6NFE2 343 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 ELOA3DA6NLF2 546 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-204ENST00000549064 CHMP2AO43633 222 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 HYAL3O43820 417 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-204ENST00000549064 STBD1O95210 358 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 FOSP01100 380 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-204ENST00000549064 CYP11A1P05108 521 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 RHOP08100 348 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 NME1P15531 152 aaKnown RBP7.22□□□□□ -1.25
LIMA1-204ENST00000549064 GDI1P31150 447 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 HOXA9P31269 272 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 HOXA11P31270 313 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-204ENST00000549064 MPLP40238 635 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 RAP1GAPP47736 663 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 PTH1RQ03431 593 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 TCEA2Q15560 299 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 PSMD5Q16401 504 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 ELOA3BQ3SY89 546 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 AXDND1Q5T1B0 1012 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-204ENST00000549064 NFXL1Q6ZNB6 911 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 TMTC3Q6ZXV5 915 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 WDR5BQ86VZ2 330 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 CEP57Q86XR8 500 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 MAP4K3Q8IVH8 894 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 ELOA3Q8NG57 546 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 LNX1Q8TBB1 728 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-204ENST00000549064 CRYGNQ8WXF5 182 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 GJA10Q969M2 543 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 ELMO3Q96BJ8 720 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 WDR89Q96FK6 387 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-204ENST00000549064 BBC3Q96PG8 261 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-204ENST00000549064 PAAF1Q9BRP4 392 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 EDEM2Q9BV94 578 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 TRMT61BQ9BVS5 477 aaKnown RBP7.22□□□□□ -1.25
LIMA1-204ENST00000549064 ZNF334Q9HCZ1 680 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-204ENST00000549064 DISC1Q9NRI5 854 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 TBC1D22BQ9NU19 505 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 KCNH3Q9ULD8 1083 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 PPME1Q9Y570 386 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 CNTNAP5Q8WYK1 1306 aa7.22□□□□□ -1.25
LIMA1-204ENST00000549064 ASH1LQ9NR48 2969 aaKnown RBP7.21□□□□□ -1.25
LIMA1-204ENST00000549064 PRAMEF27A3QJZ7 478 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 SLC22A31A6NKX4 558 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 WDR64B1ANS9 1081 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 RPP40O75818 363 aaKnown RBP7.21□□□□□ -1.26
LIMA1-204ENST00000549064 PAPSS2O95340 614 aaPredicted RBP7.21□□□□□ -1.26
LIMA1-204ENST00000549064 CYP3A4P08684 503 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 FAM153BP0C7A2 387 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 CALM1P0DP23 149 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 CALM2P0DP24 149 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 CALM3P0DP25 149 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 ARL4DP49703 201 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 DNM2P50570 870 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 CDC42EP1Q00587 391 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 CREMQ03060 361 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 PRR16Q569H4 304 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 FAM78AQ5JUQ0 283 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 FAM171A1Q5VUB5 890 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 VITQ6UXI7 678 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 NLRC3Q7RTR2 1065 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 CACNA2D4Q7Z3S7 1137 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 GPR65Q8IYL9 337 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 TAB3Q8N5C8 712 aaPredicted RBP7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms