RNA–Protein interactions for RNA: ENST00000547374.5

BRF1-210, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, human

TSL 5

Gene BRF1, Length 3,809 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRF1-210	ENST00000547374	FGFR1	P11362	822 aa		13.62	□□□□□ -0.23
BRF1-210	ENST00000547374	PTDSS1	P48651	473 aa	Known RBP	13.62	□□□□□ -0.23
BRF1-210	ENST00000547374	HSD17B4	P51659	736 aa		13.62	□□□□□ -0.23
BRF1-210	ENST00000547374	MKRN3	Q13064	507 aa	Known RBP	13.62	□□□□□ -0.23
BRF1-210	ENST00000547374	THOC5	Q13769	683 aa	Known RBP	13.62	□□□□□ -0.23
BRF1-210	ENST00000547374	KBTBD12	Q3ZCT8	623 aa		13.62	□□□□□ -0.23
BRF1-210	ENST00000547374	SH3PXD2A	Q5TCZ1	1133 aa		13.62	□□□□□ -0.23
BRF1-210	ENST00000547374	ATP11C	Q8NB49	1132 aa		13.62	□□□□□ -0.23
BRF1-210	ENST00000547374	MIS12	Q9H081	205 aa		13.62	□□□□□ -0.23
BRF1-210	ENST00000547374	ANKEF1	Q9NU02	776 aa		13.62	□□□□□ -0.23
BRF1-210	ENST00000547374	ARFGEF1	Q9Y6D6	1849 aa		13.62	□□□□□ -0.23
BRF1-210	ENST00000547374	PSTPIP1	O43586	416 aa		13.62	□□□□□ -0.23
BRF1-210	ENST00000547374	F7	P08709	466 aa	Predicted RBP	13.62	□□□□□ -0.23
BRF1-210	ENST00000547374	SAT1	P21673	171 aa		13.62	□□□□□ -0.23
BRF1-210	ENST00000547374	VCP	P55072	806 aa	Known RBP	13.62	□□□□□ -0.23
BRF1-210	ENST00000547374	EML3	Q32P44	896 aa		13.62	□□□□□ -0.23
BRF1-210	ENST00000547374	KHDC1	Q4VXA5	237 aa	Known RBP	13.62	□□□□□ -0.23
BRF1-210	ENST00000547374	DENND1B	Q6P3S1	775 aa		13.62	□□□□□ -0.23
BRF1-210	ENST00000547374	SYDE1	Q6ZW31	735 aa	Predicted RBP	13.62	□□□□□ -0.23
BRF1-210	ENST00000547374	NCAPG2	Q86XI2	1143 aa		13.62	□□□□□ -0.23
BRF1-210	ENST00000547374	C12orf50	Q8NA57	414 aa	Predicted RBP	13.62	□□□□□ -0.23
BRF1-210	ENST00000547374	TFAP2B	Q92481	460 aa		13.62	□□□□□ -0.23
BRF1-210	ENST00000547374	PTPRN2	Q92932	1015 aa		13.62	□□□□□ -0.23
BRF1-210	ENST00000547374	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.62	□□□□□ -0.23
BRF1-210	ENST00000547374	CEP41	Q9BYV8	373 aa		13.62	□□□□□ -0.23
BRF1-210	ENST00000547374	ZCWPW1	Q9H0M4	648 aa		13.62	□□□□□ -0.23
BRF1-210	ENST00000547374	CCDC78	A2IDD5	438 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374		B2RBV5	119 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	TRIM49D1	C9J1S8	452 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	NOP56	O00567	594 aa	Known RBP	13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	CYB561D2	O14569	222 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	COPE	O14579	308 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	ATXN3	P54252	364 aa	Predicted RBP	13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	ENOSF1	Q7L5Y1	443 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	TAS1R3	Q7RTX0	852 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	ALYREF	Q86V81	257 aa	Known RBP	13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	TTLL6	Q8N841	843 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	THTPA	Q9BU02	230 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374		I3L4J1	428 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374		M0QYV0	167 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	KCNN4	O15554	427 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	EDF1	O60869	148 aa	Known RBP	13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	TOP3B	O95985	862 aa	Known RBP	13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	GM2A	P17900	193 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	RPL22	P35268	128 aa	Known RBP	13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	RAB6C	Q53S08	254 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	PPFIBP2	Q8ND30	876 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	CCDC110	Q8TBZ0	833 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	PRPF31	Q8WWY3	499 aa	Known RBP	13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	DNAJC9	Q8WXX5	260 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	GRAMD1A	Q96CP6	724 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	TMEM120A	Q9BXJ8	343 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	RAB6C	Q9H0N0	254 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	RNPEPL1	Q9HAU8	725 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	PCMTD2	Q9NV79	361 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	SEPT10	Q9P0V9	454 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	PACSIN3	Q9UKS6	424 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	MEI4	A8MW99	385 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	KBTBD13	C9JR72	458 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	MTA2	O94776	668 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	HSPA1L	P34931	641 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	PTGER2	P43116	358 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	C15orf59	Q2T9L4	293 aa	Predicted RBP	13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	KATNAL2	Q8IYT4	538 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	ANKLE1	Q8NAG6	615 aa		13.61	□□□□□ -0.23
BRF1-210	ENST00000547374	LOC100653049	A0A140TA62	436 aa		13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	KRT34	O76011	436 aa		13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	CALB2	P22676	271 aa		13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	TTC25	Q96NG3	672 aa		13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	SLC38A10	Q9HBR0	1119 aa		13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	ACSS2	Q9NR19	701 aa		13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	STAU2	Q9NUL3	570 aa	Known RBP eCLIP	13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	MRPL42	Q9Y6G3	142 aa	Known RBP	13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	WDR46	O15213	610 aa	Known RBP	13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	C4BPA	P04003	597 aa	Known RBP	13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	PGM1	P36871	562 aa		13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	RFC5	P40937	340 aa		13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	CRADD	P78560	199 aa		13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	PLEKHG4	Q58EX7	1191 aa		13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	CRELD2	Q6UXH1	353 aa	Predicted RBP	13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	ALLC	Q8N6M5	410 aa		13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	POU5F2	Q8N7G0	328 aa		13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	HAPLN2	Q9GZV7	340 aa		13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	CCDC134	Q9H6E4	229 aa		13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	EBF2	Q9HAK2	575 aa		13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	AVEN	Q9NQS1	362 aa	Predicted RBP	13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	SMG5	Q9UPR3	1016 aa	Known RBP	13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	GPX6	P59796	221 aa		13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	CXCL9	Q07325	125 aa		13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	PDK4	Q16654	411 aa		13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	ZNF568	Q3ZCX4	644 aa		13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	GALNTL6	Q49A17	601 aa		13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	SULF1	Q8IWU6	871 aa		13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	AGGF1	Q8N302	714 aa	eCLIP	13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	STK32A	Q8WU08	396 aa		13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	ADPGK	Q9BRR6	497 aa		13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	COQ4	Q9Y3A0	265 aa		13.6	□□□□□ -0.23
BRF1-210	ENST00000547374	VWA5A	O00534	786 aa		13.59	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms