RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 FBXO36Q8NEA4 188 aa16.6■□□□□ 0.25
LDLR-204ENST00000545707 JDP2Q8WYK2 163 aa16.6■□□□□ 0.25
LDLR-204ENST00000545707 ZBTB10Q96DT7 871 aa16.6■□□□□ 0.25
LDLR-204ENST00000545707 NIF3L1Q9GZT8 377 aa16.6■□□□□ 0.25
LDLR-204ENST00000545707 STK32BQ9NY57 414 aa16.6■□□□□ 0.25
LDLR-204ENST00000545707 SMG5Q9UPR3 1016 aaKnown RBP16.6■□□□□ 0.25
LDLR-204ENST00000545707 SHOC2Q9UQ13 582 aa16.6■□□□□ 0.25
LDLR-204ENST00000545707 FARP1Q9Y4F1 1045 aaPredicted RBP16.6■□□□□ 0.25
LDLR-204ENST00000545707 EIF4E1BA6NMX2 242 aaKnown RBP16.6■□□□□ 0.25
LDLR-204ENST00000545707 ATP2A1O14983 1001 aa16.6■□□□□ 0.25
LDLR-204ENST00000545707 ATG7O95352 703 aa16.6■□□□□ 0.25
LDLR-204ENST00000545707 GJB1P08034 283 aa16.6■□□□□ 0.25
LDLR-204ENST00000545707 KRT3P12035 628 aa16.6■□□□□ 0.25
LDLR-204ENST00000545707 CEP128Q6ZU80 1094 aa16.6■□□□□ 0.25
LDLR-204ENST00000545707 FAM71DQ8N9W8 422 aa16.6■□□□□ 0.25
LDLR-204ENST00000545707 C10orf82Q8WW14 230 aa16.6■□□□□ 0.25
LDLR-204ENST00000545707 RSRC1Q96IZ7 334 aaKnown RBP16.6■□□□□ 0.25
LDLR-204ENST00000545707 TXLNGQ9NUQ3 528 aa16.6■□□□□ 0.25
LDLR-204ENST00000545707 SLC17A7Q9P2U7 560 aa16.6■□□□□ 0.25
LDLR-204ENST00000545707 ADAMTS5Q9UNA0 930 aa16.6■□□□□ 0.25
LDLR-204ENST00000545707 MSCO60682 206 aa16.59■□□□□ 0.25
LDLR-204ENST00000545707 STAM2O75886 525 aa16.59■□□□□ 0.25
LDLR-204ENST00000545707 TMEM63AO94886 807 aa16.59■□□□□ 0.25
LDLR-204ENST00000545707 GM2AP17900 193 aa16.59■□□□□ 0.25
LDLR-204ENST00000545707 SLC25A11Q02978 314 aaKnown RBP16.59■□□□□ 0.25
LDLR-204ENST00000545707 TAF1BQ53T94 588 aaPredicted RBP16.59■□□□□ 0.25
LDLR-204ENST00000545707 EFHC2Q5JST6 749 aa16.59■□□□□ 0.25
LDLR-204ENST00000545707 WDR49Q8IV35 697 aa16.59■□□□□ 0.25
LDLR-204ENST00000545707 MIEF2Q96C03 454 aa16.59■□□□□ 0.25
LDLR-204ENST00000545707 SLC7A6OSQ96CW6 309 aaPredicted RBP16.59■□□□□ 0.25
LDLR-204ENST00000545707 PAFAH2Q99487 392 aa16.59■□□□□ 0.25
LDLR-204ENST00000545707 AFG3L2Q9Y4W6 797 aa16.59■□□□□ 0.25
LDLR-204ENST00000545707 GJA3Q9Y6H8 435 aa16.59■□□□□ 0.25
LDLR-204ENST00000545707 COL11A1P12107 1806 aaPredicted RBP16.59■□□□□ 0.25
LDLR-204ENST00000545707 MYH9P35579 1960 aaKnown RBP16.59■□□□□ 0.25
LDLR-204ENST00000545707 PIK3R2O00459 728 aa16.59■□□□□ 0.25
LDLR-204ENST00000545707 UBA1P22314 1058 aaKnown RBP16.59■□□□□ 0.25
LDLR-204ENST00000545707 EPHB2P29323 1055 aa16.59■□□□□ 0.25
LDLR-204ENST00000545707 ABCD1P33897 745 aa16.59■□□□□ 0.25
LDLR-204ENST00000545707 DUOXA2Q1HG44 320 aa16.59■□□□□ 0.25
LDLR-204ENST00000545707 ZNF699Q32M78 642 aa16.59■□□□□ 0.25
LDLR-204ENST00000545707 TRIM50Q86XT4 487 aa16.59■□□□□ 0.25
LDLR-204ENST00000545707 IGDCC3Q8IVU1 814 aa16.59■□□□□ 0.25
LDLR-204ENST00000545707 TCP10LQ8TDR4 215 aa16.59■□□□□ 0.25
LDLR-204ENST00000545707 RSAD2Q8WXG1 361 aa16.59■□□□□ 0.25
LDLR-204ENST00000545707 HSPH1Q92598 858 aa16.59■□□□□ 0.25
LDLR-204ENST00000545707 DDX56Q9NY93 547 aaKnown RBP16.59■□□□□ 0.25
LDLR-204ENST00000545707 SNCAIPQ9Y6H5 919 aa16.59■□□□□ 0.25
LDLR-204ENST00000545707 LSM8O95777 96 aaKnown RBP16.58■□□□□ 0.25
LDLR-204ENST00000545707 KRT19P08727 400 aa16.58■□□□□ 0.25
LDLR-204ENST00000545707 SKIV2L2P42285 1042 aaKnown RBP16.58■□□□□ 0.25
LDLR-204ENST00000545707 PSMC1P62191 440 aaKnown RBP16.58■□□□□ 0.25
LDLR-204ENST00000545707 SGSM1Q2NKQ1 1148 aa16.58■□□□□ 0.25
LDLR-204ENST00000545707 RAB6CQ53S08 254 aa16.58■□□□□ 0.25
LDLR-204ENST00000545707 CATSPERGQ6ZRH7 1159 aa16.58■□□□□ 0.25
LDLR-204ENST00000545707 MTDHQ86UE4 582 aaKnown RBP16.58■□□□□ 0.25
LDLR-204ENST00000545707 LONP2Q86WA8 852 aa16.58■□□□□ 0.25
LDLR-204ENST00000545707 PPIL6Q8IXY8 311 aa16.58■□□□□ 0.25
LDLR-204ENST00000545707 NAT8LQ8N9F0 302 aa16.58■□□□□ 0.25
LDLR-204ENST00000545707 RNF149Q8NC42 400 aa16.58■□□□□ 0.25
LDLR-204ENST00000545707 RFWD2Q8NHY2 731 aa16.58■□□□□ 0.25
LDLR-204ENST00000545707 CPXM1Q96SM3 734 aa16.58■□□□□ 0.25
LDLR-204ENST00000545707 TBC1D10AQ9BXI6 508 aa16.58■□□□□ 0.25
LDLR-204ENST00000545707 NIFKQ9BYG3 293 aaKnown RBP16.58■□□□□ 0.25
LDLR-204ENST00000545707 RAB6CQ9H0N0 254 aa16.58■□□□□ 0.25
LDLR-204ENST00000545707 TMEM134Q9H6X4 195 aa16.58■□□□□ 0.25
LDLR-204ENST00000545707 GINM1Q9NU53 330 aa16.58■□□□□ 0.25
LDLR-204ENST00000545707 SLC24A2Q9UI40 661 aa16.58■□□□□ 0.25
LDLR-204ENST00000545707 KCNG1Q9UIX4 513 aa16.58■□□□□ 0.25
LDLR-204ENST00000545707 SUFUQ9UMX1 484 aa16.58■□□□□ 0.25
LDLR-204ENST00000545707 CHMP2BQ9UQN3 213 aa16.58■□□□□ 0.25
LDLR-204ENST00000545707 RGPD3A6NKT7 1758 aaPredicted RBP16.58■□□□□ 0.24
LDLR-204ENST00000545707 RGPD4Q7Z3J3 1758 aa16.58■□□□□ 0.24
LDLR-204ENST00000545707 A0A1B0GUA9 196 aa16.58■□□□□ 0.24
LDLR-204ENST00000545707 SKAP2O75563 359 aaPredicted RBP16.58■□□□□ 0.24
LDLR-204ENST00000545707 TOM1L1O75674 476 aa16.58■□□□□ 0.24
LDLR-204ENST00000545707 ATP2A2P16615 1042 aaKnown RBP16.58■□□□□ 0.24
LDLR-204ENST00000545707 KDELR1P24390 212 aa16.58■□□□□ 0.24
LDLR-204ENST00000545707 ASPAP45381 313 aa16.58■□□□□ 0.24
LDLR-204ENST00000545707 GMPSP49915 693 aaPredicted RBP16.58■□□□□ 0.24
LDLR-204ENST00000545707 STAT5BP51692 787 aa16.58■□□□□ 0.24
LDLR-204ENST00000545707 ARL4CP56559 192 aa16.58■□□□□ 0.24
LDLR-204ENST00000545707 BASP1P80723 227 aaKnown RBP16.58■□□□□ 0.24
LDLR-204ENST00000545707 TARBP2Q15633 366 aaKnown RBP16.58■□□□□ 0.24
LDLR-204ENST00000545707 NPNTQ6UXI9 565 aa16.58■□□□□ 0.24
LDLR-204ENST00000545707 PALM2Q8IXS6 379 aa16.58■□□□□ 0.24
LDLR-204ENST00000545707 TMEM192Q8IY95 271 aa16.58■□□□□ 0.24
LDLR-204ENST00000545707 PTPRN2Q92932 1015 aa16.58■□□□□ 0.24
LDLR-204ENST00000545707 LRMDAQ9H2I8 198 aa16.58■□□□□ 0.24
LDLR-204ENST00000545707 METTL5Q9NRN9 209 aaKnown RBP16.58■□□□□ 0.24
LDLR-204ENST00000545707 SENP1Q9P0U3 644 aa16.58■□□□□ 0.24
LDLR-204ENST00000545707 SPDYE16A6NNV3 312 aaPredicted RBP16.57■□□□□ 0.24
LDLR-204ENST00000545707 EIF4BP23588 611 aaKnown RBP16.57■□□□□ 0.24
LDLR-204ENST00000545707 ALDH3A1P30838 453 aa16.57■□□□□ 0.24
LDLR-204ENST00000545707 ZNF280AP59817 542 aaPredicted RBP16.57■□□□□ 0.24
LDLR-204ENST00000545707 MMRN1Q13201 1228 aa16.57■□□□□ 0.24
LDLR-204ENST00000545707 SEPT7Q16181 437 aaKnown RBP16.57■□□□□ 0.24
LDLR-204ENST00000545707 SH3PXD2AQ5TCZ1 1133 aa16.57■□□□□ 0.24
LDLR-204ENST00000545707 RGS9BPQ6ZS82 235 aa16.57■□□□□ 0.24
LDLR-204ENST00000545707 DPH6Q7L8W6 267 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms