RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 TCF4P15884 667 aa9.18□□□□□ -0.94
TDP1-204ENST00000545686 SSTR1P30872 391 aa9.18□□□□□ -0.94
TDP1-204ENST00000545686 ETV4P43268 484 aa9.18□□□□□ -0.94
TDP1-204ENST00000545686 NEK3P51956 506 aa9.18□□□□□ -0.94
TDP1-204ENST00000545686 AP3M2P53677 418 aa9.18□□□□□ -0.94
TDP1-204ENST00000545686 NLRP11P59045 1033 aaKnown RBP9.18□□□□□ -0.94
TDP1-204ENST00000545686 SLC34A1Q06495 639 aa9.18□□□□□ -0.94
TDP1-204ENST00000545686 PRKD1Q15139 912 aaPredicted RBP9.18□□□□□ -0.94
TDP1-204ENST00000545686 RCN1Q15293 331 aa9.18□□□□□ -0.94
TDP1-204ENST00000545686 SPDYE2Q495Y8 402 aa9.18□□□□□ -0.94
TDP1-204ENST00000545686 KHDC1Q4VXA5 237 aaKnown RBP9.18□□□□□ -0.94
TDP1-204ENST00000545686 HP1BP3Q5SSJ5 553 aaPredicted RBP9.18□□□□□ -0.94
TDP1-204ENST00000545686 RFWD3Q6PCD5 774 aa9.18□□□□□ -0.94
TDP1-204ENST00000545686 DCUN1D2Q6PH85 259 aa9.18□□□□□ -0.94
TDP1-204ENST00000545686 EP400NLQ6ZTU2 488 aa9.18□□□□□ -0.94
TDP1-204ENST00000545686 BBS12Q6ZW61 710 aa9.18□□□□□ -0.94
TDP1-204ENST00000545686 MCUR1Q96AQ8 359 aa9.18□□□□□ -0.94
TDP1-204ENST00000545686 RMDN3Q96TC7 470 aa9.18□□□□□ -0.94
TDP1-204ENST00000545686 CYTH2Q99418 400 aa9.18□□□□□ -0.94
TDP1-204ENST00000545686 TSC22D3Q99576 134 aa9.18□□□□□ -0.94
TDP1-204ENST00000545686 POLR3FQ9H1D9 316 aaPredicted RBP9.18□□□□□ -0.94
TDP1-204ENST00000545686 ARL8BQ9NVJ2 186 aa9.18□□□□□ -0.94
TDP1-204ENST00000545686 RBAKQ9NYW8 714 aaPredicted RBP9.18□□□□□ -0.94
TDP1-204ENST00000545686 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.18□□□□□ -0.94
TDP1-204ENST00000545686 ZNF212Q9UDV6 495 aa9.18□□□□□ -0.94
TDP1-204ENST00000545686 DCTN4Q9UJW0 460 aa9.18□□□□□ -0.94
TDP1-204ENST00000545686 NUMBLQ9Y6R0 609 aa9.18□□□□□ -0.94
TDP1-204ENST00000545686 RLFQ13129 1914 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 C3orf70A6NLC5 250 aaPredicted RBP9.17□□□□□ -0.94
TDP1-204ENST00000545686 ZNF862O60290 1169 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 LPXNO60711 386 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 PSMG1O95456 288 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 IFNB1P01574 187 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 ATP5BP06576 529 aaKnown RBP9.17□□□□□ -0.94
TDP1-204ENST00000545686 PSAPP07602 524 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 KRT7P08729 469 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 MYCLP12524 364 aaPredicted RBP9.17□□□□□ -0.94
TDP1-204ENST00000545686 PLCB3Q01970 1234 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 SLC18A2Q05940 514 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 CDK18Q07002 472 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 AP1B1Q10567 949 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 EFTUD2Q15029 972 aaKnown RBP eCLIP9.17□□□□□ -0.942e-8■■■■■ 57.6
TDP1-204ENST00000545686 DLGAP5Q15398 846 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 NBPF20Q3BBV1 942 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 FNBP1LQ5T0N5 605 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 SNX30Q5VWJ9 437 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 LMBRD2Q68DH5 695 aaPredicted RBP9.17□□□□□ -0.94
TDP1-204ENST00000545686 TMEM154Q6P9G4 183 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 SLC30A9Q6PML9 568 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 DSTYKQ6XUX3 929 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 LRRC74BQ6ZQY2 392 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 C3orf62Q6ZUJ4 267 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 RHPN2Q8IUC4 686 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 MFN1Q8IWA4 741 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 THNSL1Q8IYQ7 743 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 PDIK1LQ8N165 341 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 TMEM35BQ8NCS4 154 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 FBXO36Q8NEA4 188 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 ZFAND2BQ8WV99 257 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 STMN2Q93045 179 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 TRAPPC9Q96Q05 1148 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 TMEM120AQ9BXJ8 343 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 IMPG2Q9BZV3 1241 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 CYP26B1Q9NR63 512 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.17□□□□□ -0.94
TDP1-204ENST00000545686 GABBR1Q9UBS5 961 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 SCOCQ9UIL1 159 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 STRIP2Q9ULQ0 834 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 NUB1Q9Y5A7 615 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 MGAMO43451 1857 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 SCN4AP35499 1836 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 PHIPQ8WWQ0 1821 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 A0A0G2JND7 137 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 TESPA1A2RU30 521 aaPredicted RBP9.17□□□□□ -0.94
TDP1-204ENST00000545686 CFAP69A5D8W1 941 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 F8VP50 259 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 F8W8V4 182 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 MT-ND3P03897 115 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 PDHA1P08559 390 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 DLDP09622 509 aaKnown RBP9.17□□□□□ -0.94
TDP1-204ENST00000545686 SP100P23497 879 aaPredicted RBP9.17□□□□□ -0.94
TDP1-204ENST00000545686 CCND2P30279 289 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 RAP1GDS1P52306 607 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 SOX10P56693 466 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 WNT7BP56706 349 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 OGDHQ02218 1023 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 MAP3K10Q02779 954 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 ZBTB16Q05516 673 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 GRM1Q13255 1194 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 GSTA3Q16772 222 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 ACSBG2Q5FVE4 666 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 WDR78Q5VTH9 848 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 FAM83AQ86UY5 434 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 TRIM42Q8IWZ5 723 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 PALM2Q8IXS6 379 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 VPS52Q8N1B4 723 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 PPFIBP2Q8ND30 876 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 SPDYE1Q8NFV5 336 aaPredicted RBP9.17□□□□□ -0.94
TDP1-204ENST00000545686 FNIP1Q8TF40 1166 aa9.17□□□□□ -0.94
TDP1-204ENST00000545686 APBB2Q92870 758 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms