RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-215	ENST00000544504	SPTLC1	O15269	473 aa		10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	THAP12	O43422	761 aa		10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	NDUFA10	O95299	355 aa		10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	CCDC175	P0C221	793 aa		10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	VDR	P11473	427 aa		10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	MSN	P26038	577 aa	Known RBP	10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	GNA15	P30679	374 aa		10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	CLCN1	P35523	988 aa		10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	KIF11	P52732	1056 aa		10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	NDST1	P52848	882 aa		10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	CDR2	Q01850	454 aa		10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	MAPRE1	Q15691	268 aa	Known RBP	10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	SLC18A3	Q16572	532 aa		10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	PAN2	Q504Q3	1202 aa	Known RBP	10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	SGO2	Q562F6	1265 aa		10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	E4F1	Q66K89	784 aa	Predicted RBP	10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	ZSCAN30	Q86W11	494 aa		10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	CRYBG2	Q8N1P7	616 aa		10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	PDCL2	Q8N4E4	241 aa		10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	EFHB	Q8N7U6	833 aa		10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	MSANTD4	Q8NCY6	345 aa		10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	CLP1	Q92989	425 aa	Known RBP	10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	CHP1	Q99653	195 aa		10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	PHF7	Q9BWX1	381 aa	Predicted RBP	10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	KCNF1	Q9H3M0	494 aa		10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	RC3H2	Q9HBD1	1191 aa	Known RBP	10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	CLEC1B	Q9P126	229 aa		10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	L1RE1	Q9UN81	338 aa		10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	PCDHB12	Q9Y5F1	795 aa		10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	PTPRZ1	P23471	2315 aa	Predicted RBP	10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	SCN1A	P35498	2009 aa		10.11	□□□□□ -0.79
YBX3-215	ENST00000544504	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	ATP8B3	O60423	1300 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	SOWAHD	A6NJG2	315 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504		H7C4K7	107 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	RBAK-RBAKDN	I3L0D1	243 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	GABRD	O14764	452 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	LCA5L	O95447	670 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	LSM8	O95777	96 aa	Known RBP	10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	GALT	P07902	379 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	LINC00271	P0C7V0	271 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	PNMA6A	P0CW24	399 aa	Predicted RBP	10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	GZMA	P12544	262 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	CD19	P15391	556 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	RAP1GAP	P47736	663 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	SLC11A1	P49279	550 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	GATM	P50440	423 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	RAD23B	P54727	409 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	CDH8	P55286	799 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	BCAR1	P56945	870 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	SNX16	P57768	344 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	TSPY1	Q01534	308 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	YWHAH	Q04917	246 aa	Predicted RBP	10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	ZNF571	Q7Z3V5	609 aa	Predicted RBP	10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	SLC47A2	Q86VL8	602 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	GPR65	Q8IYL9	337 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	NKD2	Q969F2	451 aa	Predicted RBP	10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	TMEM169	Q96HH4	297 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	RPGRIP1	Q96KN7	1286 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	HEXIM2	Q96MH2	286 aa	Known RBP	10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	ZNF830	Q96NB3	372 aa	Predicted RBP	10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	MRPL45	Q9BRJ2	306 aa	Known RBP	10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	PAAF1	Q9BRP4	392 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	PLVAP	Q9BX97	442 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	ZNF518B	Q9C0D4	1074 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	MIS12	Q9H081	205 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	SDCBP2	Q9H190	292 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	SEPT11	Q9NVA2	429 aa	Known RBP	10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	SPG21	Q9NZD8	308 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	DNAJB4	Q9UDY4	337 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	ADAMTS1	Q9UHI8	967 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	PUF60	Q9UHX1	559 aa	Known RBP	10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	NOCT	Q9UK39	431 aa	Known RBP	10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	CDH9	Q9ULB4	789 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	INTU	Q9ULD6	942 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	PCDHGC3	Q9UN70	934 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	PRG3	Q9Y2Y8	225 aa	Predicted RBP	10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	USP15	Q9Y4E8	981 aa	Predicted RBP	10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	ZNF292	O60281	2723 aa		10.1	□□□□□ -0.79
YBX3-215	ENST00000544504	OR6C75	A6NL08	312 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	SLC8A3	P57103	927 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	KRT17	Q04695	432 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	CAMK1	Q14012	370 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	CNGA2	Q16280	664 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	ASTE1	Q2TB18	679 aa	Predicted RBP	10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	ZNF394	Q53GI3	561 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	WSCD1	Q658N2	575 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	SCARA3	Q6AZY7	606 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	OVOS1	Q6IE37	1185 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	FUT10	Q6P4F1	479 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	ALKBH5	Q6P6C2	394 aa	Known RBP	10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	KCNT2	Q6UVM3	1135 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	RAD9B	Q6WBX8	426 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	ANKS3	Q6ZW76	656 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	KIAA1328	Q86T90	577 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	NOP9	Q86U38	636 aa	Known RBP	10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	GLYCTK	Q8IVS8	523 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	SLC4A11	Q8NBS3	891 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	TMEM35B	Q8NCS4	154 aa		10.09	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms