RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 APOL6Q9BWW8 343 aa17.2■□□□□ 0.34
COL4A1-204ENST00000543140 BARX2Q9UMQ3 279 aaPredicted RBP17.2■□□□□ 0.34
COL4A1-204ENST00000543140 hCG_1818297A0A087WSY0 165 aa17.2■□□□□ 0.34
COL4A1-204ENST00000543140 RGS16O15492 202 aaPredicted RBP17.2■□□□□ 0.34
COL4A1-204ENST00000543140 GPR32O75388 356 aa17.2■□□□□ 0.34
COL4A1-204ENST00000543140 CYP3A5P20815 502 aa17.2■□□□□ 0.34
COL4A1-204ENST00000543140 CDKN2BP42772 138 aa17.2■□□□□ 0.34
COL4A1-204ENST00000543140 PLCB3Q01970 1234 aa17.2■□□□□ 0.34
COL4A1-204ENST00000543140 HIC1Q14526 733 aa17.2■□□□□ 0.34
COL4A1-204ENST00000543140 P3H1Q32P28 736 aa17.2■□□□□ 0.34
COL4A1-204ENST00000543140 IZUMO3Q5VZ72 239 aa17.2■□□□□ 0.34
COL4A1-204ENST00000543140 CCDC89Q8N998 374 aa17.2■□□□□ 0.34
COL4A1-204ENST00000543140 GCOM2Q9BZD3 368 aaPredicted RBP17.2■□□□□ 0.34
COL4A1-204ENST00000543140 EPN3Q9H201 632 aa17.2■□□□□ 0.34
COL4A1-204ENST00000543140 E7EVH7 732 aa17.19■□□□□ 0.34
COL4A1-204ENST00000543140 VDRP11473 427 aa17.19■□□□□ 0.34
COL4A1-204ENST00000543140 SLC25A11Q02978 314 aaKnown RBP17.19■□□□□ 0.34
COL4A1-204ENST00000543140 CNGA2Q16280 664 aa17.19■□□□□ 0.34
COL4A1-204ENST00000543140 KYNUQ16719 465 aa17.19■□□□□ 0.34
COL4A1-204ENST00000543140 OLFML2BQ68BL8 750 aa17.19■□□□□ 0.34
COL4A1-204ENST00000543140 KAT2BQ92831 832 aa17.19■□□□□ 0.34
COL4A1-204ENST00000543140 C18orf25Q96B23 403 aaPredicted RBP17.19■□□□□ 0.34
COL4A1-204ENST00000543140 FAM129AQ9BZQ8 928 aa17.19■□□□□ 0.34
COL4A1-204ENST00000543140 TUBGCP4Q9UGJ1 667 aa17.19■□□□□ 0.34
COL4A1-204ENST00000543140 SNX9Q9Y5X1 595 aa17.19■□□□□ 0.34
COL4A1-204ENST00000543140 RRN3P2A6NIE6 340 aa17.19■□□□□ 0.34
COL4A1-204ENST00000543140 A6NJR5 290 aa17.19■□□□□ 0.34
COL4A1-204ENST00000543140 CYP2C9P11712 490 aa17.19■□□□□ 0.34
COL4A1-204ENST00000543140 KLRC2P26717 231 aa17.19■□□□□ 0.34
COL4A1-204ENST00000543140 TAF5Q15542 800 aa17.19■□□□□ 0.34
COL4A1-204ENST00000543140 CCL14Q16627 93 aa17.19■□□□□ 0.34
COL4A1-204ENST00000543140 LONRF1Q17RB8 773 aa17.19■□□□□ 0.34
COL4A1-204ENST00000543140 FAM102AQ5T9C2 384 aaPredicted RBP17.19■□□□□ 0.34
COL4A1-204ENST00000543140 TRMT10CQ7L0Y3 403 aaKnown RBP17.19■□□□□ 0.34
COL4A1-204ENST00000543140 DNAJB3Q8WWF6 145 aa17.19■□□□□ 0.34
COL4A1-204ENST00000543140 FAXDC2Q96IV6 333 aa17.19■□□□□ 0.34
COL4A1-204ENST00000543140 C10orf88Q9H8K7 445 aa17.19■□□□□ 0.34
COL4A1-204ENST00000543140 DDX56Q9NY93 547 aaKnown RBP17.19■□□□□ 0.34
COL4A1-204ENST00000543140 RASGRF2O14827 1237 aa17.18■□□□□ 0.34
COL4A1-204ENST00000543140 GRAP2O75791 330 aa17.18■□□□□ 0.34
COL4A1-204ENST00000543140 HMGCRP04035 888 aa17.18■□□□□ 0.34
COL4A1-204ENST00000543140 AKAP5P24588 427 aa17.18■□□□□ 0.34
COL4A1-204ENST00000543140 ZNF200P98182 395 aaPredicted RBP17.18■□□□□ 0.34
COL4A1-204ENST00000543140 MYO1EQ12965 1108 aa17.18■□□□□ 0.34
COL4A1-204ENST00000543140 ZNF268Q14587 947 aaPredicted RBP17.18■□□□□ 0.34
COL4A1-204ENST00000543140 CST9Q5W186 159 aa17.18■□□□□ 0.34
COL4A1-204ENST00000543140 SLC27A1Q6PCB7 646 aa17.18■□□□□ 0.34
COL4A1-204ENST00000543140 TLK2Q86UE8 772 aa17.18■□□□□ 0.34
COL4A1-204ENST00000543140 PGM2Q96G03 612 aa17.18■□□□□ 0.34
COL4A1-204ENST00000543140 MRPL45Q9BRJ2 306 aaKnown RBP17.18■□□□□ 0.34
COL4A1-204ENST00000543140 TMEM121Q9BTD3 319 aa17.18■□□□□ 0.34
COL4A1-204ENST00000543140 NT5C1AQ9BXI3 368 aa17.18■□□□□ 0.34
COL4A1-204ENST00000543140 NXF3Q9H4D5 531 aaKnown RBP17.18■□□□□ 0.34
COL4A1-204ENST00000543140 SLC5A4Q9NY91 659 aa17.18■□□□□ 0.34
COL4A1-204ENST00000543140 TSPAN16Q9UKR8 245 aa17.18■□□□□ 0.34
COL4A1-204ENST00000543140 RRP15Q9Y3B9 282 aaKnown RBP17.18■□□□□ 0.34
COL4A1-204ENST00000543140 C3orf70A6NLC5 250 aaPredicted RBP17.18■□□□□ 0.34
COL4A1-204ENST00000543140 CD48P09326 243 aa17.18■□□□□ 0.34
COL4A1-204ENST00000543140 RGS7P49802 495 aa17.18■□□□□ 0.34
COL4A1-204ENST00000543140 COPS2P61201 443 aa17.18■□□□□ 0.34
COL4A1-204ENST00000543140 BEX3Q00994 111 aa17.18■□□□□ 0.34
COL4A1-204ENST00000543140 INCA1Q0VD86 236 aa17.18■□□□□ 0.34
COL4A1-204ENST00000543140 DCAF4L1Q3SXM0 396 aa17.18■□□□□ 0.34
COL4A1-204ENST00000543140 CCDC38Q502W7 563 aa17.18■□□□□ 0.34
COL4A1-204ENST00000543140 SH3PXD2AQ5TCZ1 1133 aa17.18■□□□□ 0.34
COL4A1-204ENST00000543140 ACOT1Q86TX2 421 aa17.18■□□□□ 0.34
COL4A1-204ENST00000543140 PIWIL1Q96J94 861 aaKnown RBP17.18■□□□□ 0.34
COL4A1-204ENST00000543140 WDR35Q9P2L0 1181 aa17.18■□□□□ 0.34
COL4A1-204ENST00000543140 GNEQ9Y223 722 aaKnown RBP17.18■□□□□ 0.34
COL4A1-204ENST00000543140 NRCAMQ92823 1304 aa17.18■□□□□ 0.34
COL4A1-204ENST00000543140 IGF2BP3O00425 579 aaKnown RBP eCLIP17.17■□□□□ 0.34
COL4A1-204ENST00000543140 F2P00734 622 aa17.17■□□□□ 0.34
COL4A1-204ENST00000543140 ARSEP51690 589 aa17.17■□□□□ 0.34
COL4A1-204ENST00000543140 RAB6CQ53S08 254 aa17.17■□□□□ 0.34
COL4A1-204ENST00000543140 C6orf118Q5T5N4 469 aa17.17■□□□□ 0.34
COL4A1-204ENST00000543140 TMEM40Q8WWA1 233 aa17.17■□□□□ 0.34
COL4A1-204ENST00000543140 HSPH1Q92598 858 aa17.17■□□□□ 0.34
COL4A1-204ENST00000543140 SELENOSQ9BQE4 189 aa17.17■□□□□ 0.34
COL4A1-204ENST00000543140 LPIN3Q9BQK8 851 aa17.17■□□□□ 0.34
COL4A1-204ENST00000543140 TRIM6Q9C030 488 aaPredicted RBP17.17■□□□□ 0.34
COL4A1-204ENST00000543140 RAB6CQ9H0N0 254 aa17.17■□□□□ 0.34
COL4A1-204ENST00000543140 FAM49BQ9NUQ9 324 aa17.17■□□□□ 0.34
COL4A1-204ENST00000543140 E5RJQ4 531 aa17.17■□□□□ 0.34
COL4A1-204ENST00000543140 TULP2O00295 520 aa17.17■□□□□ 0.34
COL4A1-204ENST00000543140 EBAG9O00559 213 aa17.17■□□□□ 0.34
COL4A1-204ENST00000543140 IFNB1P01574 187 aa17.17■□□□□ 0.34
COL4A1-204ENST00000543140 HUNKP57058 714 aa17.17■□□□□ 0.34
COL4A1-204ENST00000543140 CAV1Q03135 178 aa17.17■□□□□ 0.34
COL4A1-204ENST00000543140 MAP2K5Q13163 448 aa17.17■□□□□ 0.34
COL4A1-204ENST00000543140 MFSD10Q14728 455 aa17.17■□□□□ 0.34
COL4A1-204ENST00000543140 HADHQ16836 314 aaKnown RBP17.17■□□□□ 0.34
COL4A1-204ENST00000543140 OR6B2Q6IFH4 312 aa17.17■□□□□ 0.34
COL4A1-204ENST00000543140 POLNQ7Z5Q5 900 aa17.17■□□□□ 0.34
COL4A1-204ENST00000543140 SRLQ86TD4 932 aa17.17■□□□□ 0.34
COL4A1-204ENST00000543140 NLRP14Q86W24 1093 aa17.17■□□□□ 0.34
COL4A1-204ENST00000543140 MCRS1Q96EZ8 462 aa17.17■□□□□ 0.34
COL4A1-204ENST00000543140 CCT8L2Q96SF2 557 aa17.17■□□□□ 0.34
COL4A1-204ENST00000543140 KLK14Q9P0G3 267 aa17.17■□□□□ 0.34
COL4A1-204ENST00000543140 SGK1O00141 431 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 CST8O60676 142 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms