RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 LLGL2Q6P1M3 1020 aa18.19■□□□□ 0.5
LIG1-204ENST00000542460 ELMSAN1Q6PJG2 1045 aa18.19■□□□□ 0.5
LIG1-204ENST00000542460 BAP1Q92560 729 aa18.19■□□□□ 0.5
LIG1-204ENST00000542460 CYFIP2Q96F07 1278 aa18.19■□□□□ 0.5
LIG1-204ENST00000542460 B3GNT5Q9BYG0 378 aa18.19■□□□□ 0.5
LIG1-204ENST00000542460 CYP4F11Q9HBI6 524 aa18.19■□□□□ 0.5
LIG1-204ENST00000542460 FAM49BQ9NUQ9 324 aa18.19■□□□□ 0.5
LIG1-204ENST00000542460 ABI2Q9NYB9 513 aaPredicted RBP18.19■□□□□ 0.5
LIG1-204ENST00000542460 SRGAP2BP0DMP2 458 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 CLCN1P35523 988 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 TUFMP49411 452 aaKnown RBP18.18■□□□□ 0.5
LIG1-204ENST00000542460 CDR1P51861 262 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 PTK2Q05397 1052 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 ADAM15Q13444 863 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 TRIM14Q14142 442 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 LIN9Q5TKA1 542 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 ARHGAP17Q68EM7 881 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 TMEM184AQ6ZMB5 413 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 CCDC149Q6ZUS6 474 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 RTL10Q7L3V2 364 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 FMNL3Q8IVF7 1028 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 ZNF397Q8NF99 534 aaPredicted RBP18.18■□□□□ 0.5
LIG1-204ENST00000542460 SLC2A14Q8TDB8 520 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 HNRNPABQ99729 332 aaKnown RBP18.18■□□□□ 0.5
LIG1-204ENST00000542460 MED10Q9BTT4 135 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 CAPN11Q9UMQ6 739 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 SLC27A5Q9Y2P5 690 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 ATP8B3O60423 1300 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 MYO7AQ13402 2215 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 PRRG1O14668 218 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 SEC24AO95486 1093 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 ADCY5O95622 1261 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 GYPCP04921 128 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 CCDC130P13994 396 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 STILQ15468 1287 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 PPP1R26Q5T8A7 1209 aaPredicted RBP18.18■□□□□ 0.5
LIG1-204ENST00000542460 PAQR9Q6ZVX9 377 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 FUKQ8N0W3 1084 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 VN1R2Q8NFZ6 395 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 CPLX3Q8WVH0 158 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 CASP10Q92851 521 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 MAN1C1Q9NR34 630 aa18.18■□□□□ 0.5
LIG1-204ENST00000542460 LUC7L2Q9Y383 392 aaKnown RBP18.18■□□□□ 0.5
LIG1-204ENST00000542460 GFPT2O94808 682 aa18.17■□□□□ 0.5
LIG1-204ENST00000542460 BDNFP23560 247 aa18.17■□□□□ 0.5
LIG1-204ENST00000542460 CYP2F1P24903 491 aa18.17■□□□□ 0.5
LIG1-204ENST00000542460 GNA15P30679 374 aa18.17■□□□□ 0.5
LIG1-204ENST00000542460 MAGEA11P43364 429 aa18.17■□□□□ 0.5
LIG1-204ENST00000542460 ZBED6P86452 979 aa18.17■□□□□ 0.5
LIG1-204ENST00000542460 GSE1Q14687 1217 aa18.17■□□□□ 0.5
LIG1-204ENST00000542460 MGAT5BQ3V5L5 792 aa18.17■□□□□ 0.5
LIG1-204ENST00000542460 VSTM1Q6UX27 236 aa18.17■□□□□ 0.5
LIG1-204ENST00000542460 TMC6Q7Z403 805 aa18.17■□□□□ 0.5
LIG1-204ENST00000542460 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.17■□□□□ 0.5
LIG1-204ENST00000542460 TFAP2BQ92481 460 aa18.17■□□□□ 0.5
LIG1-204ENST00000542460 ZNF518BQ9C0D4 1074 aa18.17■□□□□ 0.5
LIG1-204ENST00000542460 NUCKS1Q9H1E3 243 aaKnown RBP18.17■□□□□ 0.5
LIG1-204ENST00000542460 CRISPLD1Q9H336 500 aa18.17■□□□□ 0.5
LIG1-204ENST00000542460 ACP6Q9NPH0 428 aa18.17■□□□□ 0.5
LIG1-204ENST00000542460 DZANK1Q9NVP4 752 aa18.17■□□□□ 0.5
LIG1-204ENST00000542460 PRRC2BQ5JSZ5 2229 aaKnown RBP18.16■□□□□ 0.5
LIG1-204ENST00000542460 LRRC53A6NM62 1247 aa18.16■□□□□ 0.5
LIG1-204ENST00000542460 O00370 1275 aa18.16■□□□□ 0.5
LIG1-204ENST00000542460 CLDN5O00501 218 aa18.16■□□□□ 0.5
LIG1-204ENST00000542460 LINC01565O15544 149 aa18.16■□□□□ 0.5
LIG1-204ENST00000542460 MED7O43513 233 aa18.16■□□□□ 0.5
LIG1-204ENST00000542460 C8AP07357 584 aa18.16■□□□□ 0.5
LIG1-204ENST00000542460 TPM1P09493 284 aa18.16■□□□□ 0.5
LIG1-204ENST00000542460 CCDC172P0C7W6 258 aa18.16■□□□□ 0.5
LIG1-204ENST00000542460 HAPLN1P10915 354 aaPredicted RBP18.16■□□□□ 0.5
LIG1-204ENST00000542460 ADORA2BP29275 332 aa18.16■□□□□ 0.5
LIG1-204ENST00000542460 CASP14P31944 242 aa18.16■□□□□ 0.5
LIG1-204ENST00000542460 RBM10P98175 930 aaKnown RBP18.16■□□□□ 0.5
LIG1-204ENST00000542460 COL19A1Q14993 1142 aa18.16■□□□□ 0.5
LIG1-204ENST00000542460 CNGA2Q16280 664 aa18.16■□□□□ 0.5
LIG1-204ENST00000542460 CTC1Q2NKJ3 1217 aa18.16■□□□□ 0.5
LIG1-204ENST00000542460 FAM35AQ86V20 835 aa18.16■□□□□ 0.5
LIG1-204ENST00000542460 SLC47A2Q86VL8 602 aa18.16■□□□□ 0.5
LIG1-204ENST00000542460 SLC7A14Q8TBB6 771 aa18.16■□□□□ 0.5
LIG1-204ENST00000542460 ZNF606Q8WXB4 792 aa18.16■□□□□ 0.5
LIG1-204ENST00000542460 SMARCD1Q96GM5 515 aa18.16■□□□□ 0.5
LIG1-204ENST00000542460 SEPT5Q99719 369 aaPredicted RBP18.16■□□□□ 0.5
LIG1-204ENST00000542460 ZSWIM1Q9BR11 485 aa18.16■□□□□ 0.5
LIG1-204ENST00000542460 RHOBTB2Q9BYZ6 727 aa18.16■□□□□ 0.5
LIG1-204ENST00000542460 ATG2AQ2TAZ0 1938 aa18.15■□□□□ 0.5
LIG1-204ENST00000542460 SPDYE4A6NLX3 237 aa18.15■□□□□ 0.5
LIG1-204ENST00000542460 THAP12O43422 761 aa18.15■□□□□ 0.5
LIG1-204ENST00000542460 ZMYND10O75800 440 aa18.15■□□□□ 0.5
LIG1-204ENST00000542460 GLP2RO95838 553 aa18.15■□□□□ 0.5
LIG1-204ENST00000542460 CALCAP01258 141 aa18.15■□□□□ 0.5
LIG1-204ENST00000542460 CYP11B1P15538 503 aa18.15■□□□□ 0.5
LIG1-204ENST00000542460 FERP16591 822 aa18.15■□□□□ 0.5
LIG1-204ENST00000542460 BRD2P25440 801 aaKnown RBP18.15■□□□□ 0.5
LIG1-204ENST00000542460 CDC25BP30305 580 aa18.15■□□□□ 0.5
LIG1-204ENST00000542460 GRIK1P39086 918 aa18.15■□□□□ 0.5
LIG1-204ENST00000542460 ALDH1A3P47895 512 aa18.15■□□□□ 0.5
LIG1-204ENST00000542460 MRE11P49959 708 aa18.15■□□□□ 0.5
LIG1-204ENST00000542460 CCDC85BQ15834 202 aaPredicted RBP18.15■□□□□ 0.5
LIG1-204ENST00000542460 PPM1LQ5SGD2 360 aa18.15■□□□□ 0.5
LIG1-204ENST00000542460 SFMBT2Q5VUG0 894 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms