RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 REEP2Q9BRK0 252 aa11.64□□□□□ -0.55
CDH3-203ENST00000542274 RUSC1Q9BVN2 902 aa11.64□□□□□ -0.55
CDH3-203ENST00000542274 LACRTQ9GZZ8 138 aa11.64□□□□□ -0.55
CDH3-203ENST00000542274 EHD1Q9H4M9 534 aa11.64□□□□□ -0.55
CDH3-203ENST00000542274 RNPEPL1Q9HAU8 725 aa11.64□□□□□ -0.55
CDH3-203ENST00000542274 PALMDQ9NP74 551 aa11.64□□□□□ -0.55
CDH3-203ENST00000542274 ADARB2Q9NS39 739 aaKnown RBP11.64□□□□□ -0.55
CDH3-203ENST00000542274 EMILIN3Q9NT22 766 aa11.64□□□□□ -0.55
CDH3-203ENST00000542274 ZHX2Q9Y6X8 837 aa11.64□□□□□ -0.55
CDH3-203ENST00000542274 PHIPQ8WWQ0 1821 aa11.64□□□□□ -0.55
CDH3-203ENST00000542274 BTBD19C9JJ37 291 aa11.64□□□□□ -0.55
CDH3-203ENST00000542274 ARP10275 920 aa11.64□□□□□ -0.55
CDH3-203ENST00000542274 MAP3K7CLP57077 242 aa11.64□□□□□ -0.55
CDH3-203ENST00000542274 SPCS2Q15005 226 aa11.64□□□□□ -0.55
CDH3-203ENST00000542274 SYCP2LQ5T4T6 812 aa11.64□□□□□ -0.55
CDH3-203ENST00000542274 LRRTM3Q86VH5 581 aa11.64□□□□□ -0.55
CDH3-203ENST00000542274 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.64□□□□□ -0.55
CDH3-203ENST00000542274 STK32AQ8WU08 396 aa11.64□□□□□ -0.55
CDH3-203ENST00000542274 CHURC1Q8WUH1 139 aa11.64□□□□□ -0.55
CDH3-203ENST00000542274 WNK4Q96J92 1243 aa11.64□□□□□ -0.55
CDH3-203ENST00000542274 PURBQ96QR8 312 aaKnown RBP11.64□□□□□ -0.55
CDH3-203ENST00000542274 NT5C3AQ9H0P0 336 aa11.64□□□□□ -0.55
CDH3-203ENST00000542274 GID8Q9NWU2 228 aa11.64□□□□□ -0.55
CDH3-203ENST00000542274 WRAP73Q9P2S5 460 aaPredicted RBP11.64□□□□□ -0.55
CDH3-203ENST00000542274 RWDD3Q9Y3V2 267 aa11.64□□□□□ -0.55
CDH3-203ENST00000542274 KDM3AQ9Y4C1 1321 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 E9PBE3 544 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 NFIBO00712 420 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 ZNF263O14978 683 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 MYBP10242 640 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 PTPRAP18433 802 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 TMOD1P28289 359 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 HMGCS2P54868 508 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 NCALDP61601 193 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 MRPS25P82663 173 aaKnown RBP11.63□□□□□ -0.55
CDH3-203ENST00000542274 PPARDQ03181 441 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 TRIM14Q14142 442 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 GIT2Q14161 759 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 C4orf22Q6V702 233 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 USP43Q70EL4 1123 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 MOB2Q70IA6 237 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 SFR1Q86XK3 245 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 SLFN12Q8IYM2 578 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 BBS5Q8N3I7 341 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 RBBP8NLQ8NC74 664 aaPredicted RBP11.63□□□□□ -0.55
CDH3-203ENST00000542274 OLFM3Q96PB7 478 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 DDX50Q9BQ39 737 aaKnown RBP11.63□□□□□ -0.55
CDH3-203ENST00000542274 EIF2AK1Q9BQI3 630 aaKnown RBP11.63□□□□□ -0.55
CDH3-203ENST00000542274 SH2D3AQ9BRG2 576 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 HAUS8Q9BT25 410 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 TTPALQ9BTX7 342 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 TRPV6Q9H1D0 765 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 COL20A1Q9P218 1284 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 SIK3Q9Y2K2 1263 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 ABCB11O95342 1321 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 OR5K4A6NMS3 321 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 H0YC42 278 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 PPP1R2P41236 205 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 GSSP48637 474 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 TPD52P55327 224 aaPredicted RBP11.63□□□□□ -0.55
CDH3-203ENST00000542274 KCNMA1Q12791 1236 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 SEPT6Q14141 434 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 PPP1R2P3Q6NXS1 205 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 ZC3H18Q86VM9 953 aaKnown RBP11.63□□□□□ -0.55
CDH3-203ENST00000542274 LDHDQ86WU2 507 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 KIF2BQ8N4N8 673 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 TSEN2Q8NCE0 465 aaKnown RBP11.63□□□□□ -0.55
CDH3-203ENST00000542274 SLC17A8Q8NDX2 589 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 IL31RAQ8NI17 732 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 ASAP3Q8TDY4 903 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 KLRG1Q96E93 195 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 ZIM3Q96PE6 472 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 KIAA1683Q9H0B3 1180 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 NHEJ1Q9H9Q4 299 aaPredicted RBP11.63□□□□□ -0.55
CDH3-203ENST00000542274 NLRC4Q9NPP4 1024 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 WDR70Q9NW82 654 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 LARSQ9P2J5 1176 aaKnown RBP11.63□□□□□ -0.55
CDH3-203ENST00000542274 FEM1BQ9UK73 627 aa11.63□□□□□ -0.55
CDH3-203ENST00000542274 COL11A1P12107 1806 aaPredicted RBP11.62□□□□□ -0.55
CDH3-203ENST00000542274 OTOFQ9HC10 1997 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 A0A088AWK7 358 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 OLFM2O95897 454 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 TPBGLP0DKB5 382 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 PHBP35232 272 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 PCYT1AP49585 367 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 MOGQ16653 247 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 DPH6Q7L8W6 267 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 TMC7Q7Z402 723 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 TPH2Q8IWU9 490 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 ZBED8Q8IZ13 594 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 C12orf50Q8NA57 414 aaPredicted RBP11.62□□□□□ -0.55
CDH3-203ENST00000542274 CCDC197Q8NCU1 140 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 GOT1L1Q8NHS2 421 aaPredicted RBP11.62□□□□□ -0.55
CDH3-203ENST00000542274 MAML1Q92585 1016 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 DYDC2Q96IM9 177 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 RAVER2Q9HCJ3 691 aaKnown RBP11.62□□□□□ -0.55
CDH3-203ENST00000542274 BMP2KQ9NSY1 1161 aaPredicted RBP11.62□□□□□ -0.55
CDH3-203ENST00000542274 PTTG2Q9NZH5 202 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 STIM2Q9P246 746 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 TSKSQ9UJT2 592 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms