RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 SYT15Q9BQS2 421 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 MRPL9Q9BYD2 267 aaKnown RBP14.72□□□□□ -0.05
USP3-204ENST00000540797 GOLPH3Q9H4A6 298 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 PLAGL2Q9UPG8 496 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 ASS1P00966 412 aaKnown RBP14.72□□□□□ -0.05
USP3-204ENST00000540797 MAP2K5Q13163 448 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 PTRHD1Q6GMV3 140 aaKnown RBP14.72□□□□□ -0.05
USP3-204ENST00000540797 CXCL17Q6UXB2 119 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 C4orf22Q6V702 233 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 GPR142Q7Z601 462 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 FAM71DQ8N9W8 422 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 DCTN4Q9UJW0 460 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 PKP3Q9Y446 797 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 C3P01024 1663 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 FKTNO75072 461 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 MKRN4PQ13434 485 aaPredicted RBP14.72□□□□□ -0.05
USP3-204ENST00000540797 ZPBP2Q6X784 338 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 ITIH5Q86UX2 942 aa14.72□□□□□ -0.05
USP3-204ENST00000540797 EML4Q9HC35 981 aaKnown RBP14.72□□□□□ -0.05
USP3-204ENST00000540797 MYL4P12829 197 aa14.71□□□□□ -0.05
USP3-204ENST00000540797 PTGER2P43116 358 aa14.71□□□□□ -0.05
USP3-204ENST00000540797 BST2Q10589 180 aaKnown RBP14.71□□□□□ -0.05
USP3-204ENST00000540797 TMEM119Q4V9L6 283 aa14.71□□□□□ -0.05
USP3-204ENST00000540797 ZNF507Q8TCN5 953 aa14.71□□□□□ -0.05
USP3-204ENST00000540797 COPS5Q92905 334 aa14.71□□□□□ -0.05
USP3-204ENST00000540797 C9orf72Q96LT7 481 aa14.71□□□□□ -0.05
USP3-204ENST00000540797 SYT17Q9BSW7 474 aa14.71□□□□□ -0.05
USP3-204ENST00000540797 ASB7Q9H672 318 aa14.71□□□□□ -0.05
USP3-204ENST00000540797 CHMP2BQ9UQN3 213 aa14.71□□□□□ -0.05
USP3-204ENST00000540797 PLEKP08567 350 aaPredicted RBP14.71□□□□□ -0.05
USP3-204ENST00000540797 ARL4DP49703 201 aa14.71□□□□□ -0.05
USP3-204ENST00000540797 FAM171A1Q5VUB5 890 aa14.71□□□□□ -0.05
USP3-204ENST00000540797 ADCK2Q7Z695 626 aa14.71□□□□□ -0.05
USP3-204ENST00000540797 CARNMT1Q8N4J0 409 aa14.71□□□□□ -0.05
USP3-204ENST00000540797 TGS1Q96RS0 853 aaKnown RBP14.71□□□□□ -0.05
USP3-204ENST00000540797 PCDHB5Q9Y5E4 795 aa14.71□□□□□ -0.05
USP3-204ENST00000540797 ANXA9O76027 345 aa14.71□□□□□ -0.05
USP3-204ENST00000540797 POLBP06746 335 aa14.71□□□□□ -0.05
USP3-204ENST00000540797 LRRC14Q15048 493 aa14.71□□□□□ -0.05
USP3-204ENST00000540797 COBLL1Q53SF7 1204 aa14.71□□□□□ -0.05
USP3-204ENST00000540797 SLFN11Q7Z7L1 901 aa14.71□□□□□ -0.05
USP3-204ENST00000540797 JAMLQ86YT9 394 aa14.71□□□□□ -0.05
USP3-204ENST00000540797 FAM172AQ8WUF8 416 aa14.71□□□□□ -0.05
USP3-204ENST00000540797 A0A087X0T9 212 aa14.71□□□□□ -0.06
USP3-204ENST00000540797 FAM228BP0C875 321 aa14.71□□□□□ -0.06
USP3-204ENST00000540797 MEI1Q5TIA1 1274 aa14.71□□□□□ -0.06
USP3-204ENST00000540797 RUBCNQ92622 972 aa14.71□□□□□ -0.06
USP3-204ENST00000540797 WNK4Q96J92 1243 aa14.71□□□□□ -0.06
USP3-204ENST00000540797 SENP1Q9P0U3 644 aa14.71□□□□□ -0.06
USP3-204ENST00000540797 FRMPD4Q14CM0 1322 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 GLTPD2A6NH11 291 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 GOLGA8RI6L899 631 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 SMAPO00193 183 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 PSTPIP1O43586 416 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 KLRC2P26717 231 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 TKTL1P51854 596 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 ZRANB3Q5FWF4 1079 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 TRMT10CQ7L0Y3 403 aaKnown RBP14.7□□□□□ -0.06
USP3-204ENST00000540797 TPCN2Q8NHX9 752 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 DDI1Q8WTU0 396 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 TRABDQ9H4I3 376 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 INTS13Q9NVM9 706 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 CNTNAP2Q9UHC6 1331 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 PGK1P00558 417 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 SERPINB9P50453 376 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 AGR3Q8TD06 166 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 ATP6V1G3Q96LB4 118 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 ADAM33Q9BZ11 813 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 PMPCBO75439 489 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 SERPIND1P05546 499 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 ARFIP2P53365 341 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 KCNF1Q9H3M0 494 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 CHST12Q9NRB3 414 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 RBM12Q9NTZ6 932 aaKnown RBP14.7□□□□□ -0.06
USP3-204ENST00000540797 NSMCE4AQ9NXX6 385 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 SMARCAL1Q9NZC9 954 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 ZFP69BQ9UJL9 534 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 BARX2Q9UMQ3 279 aaPredicted RBP14.7□□□□□ -0.06
USP3-204ENST00000540797 NPM3O75607 178 aaKnown RBP14.7□□□□□ -0.06
USP3-204ENST00000540797 LSM8O95777 96 aaKnown RBP14.7□□□□□ -0.06
USP3-204ENST00000540797 PYGLP06737 847 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 HMOX2P30519 316 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 KCNJ1P48048 391 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 ZNF200P98182 395 aaPredicted RBP14.7□□□□□ -0.06
USP3-204ENST00000540797 BEND6Q5SZJ8 279 aaPredicted RBP14.7□□□□□ -0.06
USP3-204ENST00000540797 KLRG1Q96E93 195 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 APBA2Q99767 749 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 ADAM2Q99965 735 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 NRCAMQ92823 1304 aa14.7□□□□□ -0.06
USP3-204ENST00000540797 SMIM22K7EJ46 135 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 LINC00523Q86TU6 105 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 CCDC60Q8IWA6 550 aaPredicted RBP14.69□□□□□ -0.06
USP3-204ENST00000540797 CNPY4Q8N129 248 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 GBP7Q8N8V2 638 aaPredicted RBP14.69□□□□□ -0.06
USP3-204ENST00000540797 USP20Q9Y2K6 914 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 STX7O15400 261 aaKnown RBP14.69□□□□□ -0.06
USP3-204ENST00000540797 SETSIPP0DME0 302 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 SLURP2P0DP57 97 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 RGS4P49798 205 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 OXCT1P55809 520 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms