RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 HAUS4Q9H6D7 363 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.21□□□□□ -0.61
VPS33A-204ENST00000540669 BZW2Q9Y6E2 419 aaKnown RBP11.21□□□□□ -0.61
VPS33A-204ENST00000540669 MYO9BQ13459 2157 aa11.21□□□□□ -0.62
VPS33A-204ENST00000540669 DENND4CQ5VZ89 1909 aa11.21□□□□□ -0.62
VPS33A-204ENST00000540669 MYO16Q9Y6X6 1858 aa11.21□□□□□ -0.62
VPS33A-204ENST00000540669 WDR27A2RRH5 827 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 MTMR11A4FU01 709 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 C2orf71A6NGG8 1288 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 LSM8O95777 96 aaKnown RBP11.2□□□□□ -0.62
VPS33A-204ENST00000540669 CALCAP01258 141 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 TPM1P09493 284 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 UNGP13051 313 aaPredicted RBP11.2□□□□□ -0.62
VPS33A-204ENST00000540669 KRT5P13647 590 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 ACAT1P24752 427 aaKnown RBP11.2□□□□□ -0.62
VPS33A-204ENST00000540669 BRD2P25440 801 aaKnown RBP11.2□□□□□ -0.62
VPS33A-204ENST00000540669 MAGEA11P43364 429 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 PDE6CP51160 858 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 CACNA2D1P54289 1103 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 GSCP56915 257 aaPredicted RBP11.2□□□□□ -0.62
VPS33A-204ENST00000540669 CREMQ03060 361 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 SMARCB1Q12824 385 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 PTP4A2Q12974 167 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 KCNC3Q14003 757 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 BMS1Q14692 1282 aaKnown RBP11.2□□□□□ -0.62
VPS33A-204ENST00000540669 SGO2Q562F6 1265 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 PPP1R26Q5T8A7 1209 aaPredicted RBP11.2□□□□□ -0.62
VPS33A-204ENST00000540669 PDE12Q6L8Q7 609 aaKnown RBP11.2□□□□□ -0.62
VPS33A-204ENST00000540669 LILRA6Q6PI73 481 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 RAD9BQ6WBX8 426 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 METTL23Q86XA0 190 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 WDTC1Q8N5D0 677 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 MRPL43Q8N983 215 aaKnown RBP11.2□□□□□ -0.62
VPS33A-204ENST00000540669 CCDC112Q8NEF3 446 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 FBXO22Q8NEZ5 403 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 ZMIZ2Q8NF64 920 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 CPLX3Q8WVH0 158 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 POF1BQ8WVV4 589 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 RIN2Q8WYP3 895 aaPredicted RBP11.2□□□□□ -0.62
VPS33A-204ENST00000540669 MYLPFQ96A32 169 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 LPIN3Q9BQK8 851 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 B3GNT5Q9BYG0 378 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 CRISPLD1Q9H336 500 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 SNX25Q9H3E2 840 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 PNPLA8Q9NP80 782 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 NGRNQ9NPE2 291 aaKnown RBP11.2□□□□□ -0.62
VPS33A-204ENST00000540669 TLR9Q9NR96 1032 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 CYTH4Q9UIA0 394 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 TSPAN16Q9UKR8 245 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 MAFFQ9ULX9 164 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 REXO2Q9Y3B8 237 aaKnown RBP11.2□□□□□ -0.62
VPS33A-204ENST00000540669 DENND4AQ7Z401 1863 aa11.2□□□□□ -0.62
VPS33A-204ENST00000540669 MYH10P35580 1976 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 BRWD1Q9NSI6 2320 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 A0A087X0T9 212 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 HHLA1C9JL84 531 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 TEX28O15482 410 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 GABBR2O75899 941 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 MMEP08473 750 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 CNPP09543 421 aaKnown RBP11.19□□□□□ -0.62
VPS33A-204ENST00000540669 CCDC172P0C7W6 258 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 FAM228BP0C875 321 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 SETSIPP0DME0 302 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 CCDC130P13994 396 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 POU3F3P20264 500 aaPredicted RBP11.19□□□□□ -0.62
VPS33A-204ENST00000540669 IRS1P35568 1242 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 GPD2P43304 727 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 PLA2G4AP47712 749 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 NDUFV1P49821 464 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 TSPY1Q01534 308 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 KRT17Q04695 432 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 KLHL30Q0D2K2 578 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 COL19A1Q14993 1142 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 MAPRE1Q15691 268 aaKnown RBP11.19□□□□□ -0.62
VPS33A-204ENST00000540669 SLC18A3Q16572 532 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 NFE2Q16621 373 aaPredicted RBP11.19□□□□□ -0.62
VPS33A-204ENST00000540669 PTPROQ16827 1216 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 CTXN3Q4LDR2 81 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 ZNF394Q53GI3 561 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 MDH1BQ5I0G3 518 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 TPGS2Q68CL5 300 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 CYP26C1Q6V0L0 522 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 TRIM72Q6ZMU5 477 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 CLEC20AQ6ZU45 233 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 Q7L0L9 218 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 TMTC1Q8IUR5 882 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 CCDC170Q8IYT3 715 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 SLC2A14Q8TDB8 520 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 STK32AQ8WU08 396 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 C2orf15Q8WU43 125 aaKnown RBP11.19□□□□□ -0.62
VPS33A-204ENST00000540669 SLC35F5Q8WV83 523 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 AGPAT1Q99943 283 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 ZNF518BQ9C0D4 1074 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 ISCUQ9H1K1 167 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 TTYH1Q9H313 450 aaPredicted RBP11.19□□□□□ -0.62
VPS33A-204ENST00000540669 ALG13Q9NP73 1137 aaKnown RBP11.19□□□□□ -0.62
VPS33A-204ENST00000540669 CYLDQ9NQC7 956 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 GTF3C4Q9UKN8 822 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 SSX2IPQ9Y2D8 614 aa11.19□□□□□ -0.62
VPS33A-204ENST00000540669 CDY1Q9Y6F8 540 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms