RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 NELL2Q99435 816 aa12.36□□□□□ -0.43
RTN3-209ENST00000538995 GTPBP4Q9BZE4 634 aaKnown RBP12.36□□□□□ -0.43
RTN3-209ENST00000538995 SNX25Q9H3E2 840 aa12.36□□□□□ -0.43
RTN3-209ENST00000538995 LTB4R2Q9NPC1 389 aa12.36□□□□□ -0.43
RTN3-209ENST00000538995 DLGAP2Q9P1A6 1054 aa12.36□□□□□ -0.43
RTN3-209ENST00000538995 MRPS17Q9Y2R5 130 aaKnown RBP12.36□□□□□ -0.43
RTN3-209ENST00000538995 H0Y858 1186 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 ARNTLO00327 626 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 MAN2B1O00754 1011 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 DPYSL4O14531 572 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 ZNF263O14978 683 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 CHADO15335 359 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 HCRTO43612 131 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 F11P03951 625 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 C4BPAP04003 597 aaKnown RBP12.35□□□□□ -0.43
RTN3-209ENST00000538995 P4HA1P13674 534 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 NR2F2P24468 414 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 LMO2P25791 158 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 GDI1P31150 447 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 GNL1P36915 607 aaPredicted RBP12.35□□□□□ -0.43
RTN3-209ENST00000538995 PSMC1P62191 440 aaKnown RBP12.35□□□□□ -0.43
RTN3-209ENST00000538995 CYP4F8P98187 520 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 PLCB2Q00722 1185 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 EDRF1Q3B7T1 1238 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 ZACNQ401N2 412 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 ZCWPW2Q504Y3 356 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 COBLL1Q53SF7 1204 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 CEP135Q66GS9 1140 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 C1orf228Q6PIY5 440 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 ZNF852Q6ZMS4 543 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 TPRG1Q6ZUI0 275 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 TMEM150AQ86TG1 271 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 YAF2Q8IY57 180 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 ENGASEQ8NFI3 743 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 MYCBPAPQ8TBZ2 947 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 MRPS31Q92665 395 aaKnown RBP12.35□□□□□ -0.43
RTN3-209ENST00000538995 TAF4BQ92750 862 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 ATOH1Q92858 354 aaPredicted RBP12.35□□□□□ -0.43
RTN3-209ENST00000538995 SPATA17Q96L03 361 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 TIGD1Q96MW7 591 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 GSDMAQ96QA5 445 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 MRPL45Q9BRJ2 306 aaKnown RBP12.35□□□□□ -0.43
RTN3-209ENST00000538995 FOXQ1Q9C009 403 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 KIF9Q9HAQ2 790 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 CRTAC1Q9NQ79 661 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 HEBP1Q9NRV9 189 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 MAGEC2Q9UBF1 373 aaPredicted RBP12.35□□□□□ -0.43
RTN3-209ENST00000538995 HOOK1Q9UJC3 728 aaKnown RBP12.35□□□□□ -0.43
RTN3-209ENST00000538995 CIZ1Q9ULV3 898 aaPredicted RBP12.35□□□□□ -0.43
RTN3-209ENST00000538995 NCANO14594 1321 aa12.35□□□□□ -0.43
RTN3-209ENST00000538995 SLC38A8A6NNN8 435 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 PROB1E7EW31 1015 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 TRIM66O15016 1216 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 NCAM2O15394 837 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 ATP2C2O75185 946 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 SMC2O95347 1197 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 VNN1O95497 513 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 DCNP07585 359 aaKnown RBP12.34□□□□□ -0.43
RTN3-209ENST00000538995 PSMC2P35998 433 aaKnown RBP12.34□□□□□ -0.43
RTN3-209ENST00000538995 AVPR1AP37288 418 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 NBL1P41271 181 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 GPR15P49685 360 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 MRE11P49959 708 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 VAMP7P51809 220 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 CDR1P51861 262 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 MCCD1P59942 119 aaPredicted RBP12.34□□□□□ -0.43
RTN3-209ENST00000538995 UBXN2BQ14CS0 331 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 ANGPT1Q15389 498 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 DDR2Q16832 855 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 CCDC142Q17RM4 750 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 SGSM1Q2NKQ1 1148 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 ARHGAP29Q52LW3 1261 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 ZNF667Q5HYK9 610 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 ELOA2Q8IYF1 753 aaPredicted RBP12.34□□□□□ -0.43
RTN3-209ENST00000538995 CMTM8Q8IZV2 173 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 CELF5Q8N6W0 485 aaKnown RBP12.34□□□□□ -0.43
RTN3-209ENST00000538995 OR6B3Q8NGW1 331 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 SPATA20Q8TB22 786 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 RSPRY1Q96DX4 576 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 PCED1BQ96HM7 432 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 BCO2Q9BYV7 579 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 ELOVL4Q9GZR5 314 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 EHD2Q9NZN4 543 aa12.34□□□□□ -0.43
RTN3-209ENST00000538995 NXF1Q9UBU9 619 aaKnown RBP12.34□□□□□ -0.43
RTN3-209ENST00000538995 F5P12259 2224 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 FAM170BA6NMN3 283 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 A8MXQ7 604 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 TADA3O75528 432 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 AKAP3O75969 853 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 PRAMEF12O95522 483 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 PDGFRBP09619 1106 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 KRT13P13646 458 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 PTPN1P18031 435 aaKnown RBP12.33□□□□□ -0.44
RTN3-209ENST00000538995 TARSP26639 723 aaKnown RBP12.33□□□□□ -0.44
RTN3-209ENST00000538995 ANXA13P27216 316 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 RPS9P46781 194 aaKnown RBP12.33□□□□□ -0.44
RTN3-209ENST00000538995 DLG4P78352 724 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 CYP27A1Q02318 531 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 ADAM9Q13443 819 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 PNOCQ13519 176 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms