RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 LRRC15Q8TF66 581 aa7.06□□□□□ -1.28
USP28-207ENST00000538475 U2AF1L4Q8WU68 220 aaKnown RBP7.06□□□□□ -1.28
USP28-207ENST00000538475 UCMAQ8WVF2 138 aa7.06□□□□□ -1.28
USP28-207ENST00000538475 C17orf50Q8WW18 174 aa7.06□□□□□ -1.28
USP28-207ENST00000538475 JADE3Q92613 823 aa7.06□□□□□ -1.28
USP28-207ENST00000538475 PTCD3Q96EY7 689 aaKnown RBP7.06□□□□□ -1.28
USP28-207ENST00000538475 TRIM55Q9BYV6 548 aa7.06□□□□□ -1.28
USP28-207ENST00000538475 TRIM31Q9BZY9 425 aa7.06□□□□□ -1.28
USP28-207ENST00000538475 MUC3BQ9H195 1237 aa7.06□□□□□ -1.28
USP28-207ENST00000538475 GLT8D2Q9H1C3 349 aa7.06□□□□□ -1.28
USP28-207ENST00000538475 Q9H521 79 aa7.06□□□□□ -1.28
USP28-207ENST00000538475 TUT1Q9H6E5 874 aaKnown RBP7.06□□□□□ -1.28
USP28-207ENST00000538475 NDE1Q9NXR1 346 aa7.06□□□□□ -1.28
USP28-207ENST00000538475 ZNHIT2Q9UHR6 403 aa7.06□□□□□ -1.28
USP28-207ENST00000538475 PPP1R9AQ9ULJ8 1098 aa7.06□□□□□ -1.28
USP28-207ENST00000538475 NAALADL1Q9UQQ1 740 aa7.06□□□□□ -1.28
USP28-207ENST00000538475 THRAP3Q9Y2W1 955 aaKnown RBP7.06□□□□□ -1.28
USP28-207ENST00000538475 SBDSQ9Y3A5 250 aaKnown RBP eCLIP7.06□□□□□ -1.28
USP28-207ENST00000538475 PPME1Q9Y570 386 aa7.06□□□□□ -1.28
USP28-207ENST00000538475 PHLPP1O60346 1717 aa7.06□□□□□ -1.28
USP28-207ENST00000538475 COL24A1Q17RW2 1714 aa7.06□□□□□ -1.28
USP28-207ENST00000538475 ITGB4P16144 1822 aa7.06□□□□□ -1.28
USP28-207ENST00000538475 NFASCO94856 1347 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 UBE4BO95155 1302 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 A0A1B0GVG6 124 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 A0A1W2PRG0 241 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 PP2D1A8MPX8 630 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 MINDY4BA8MYZ0 360 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 RASA4BC9J798 803 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 IPO5O00410 1097 aaKnown RBP7.05□□□□□ -1.28
USP28-207ENST00000538475 KLF11O14901 512 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 RASA4O43374 803 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 THAP12O43422 761 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 ZNF862O60290 1169 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 FAM155BO75949 473 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 RARBP10826 455 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 UQCRBP14927 111 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 ANPEPP15144 967 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 TNFAIP3P21580 790 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 FGFR4P22455 802 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 CYP7A1P22680 504 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 RTP1P59025 263 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 ACTR3P61158 418 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 CREB5Q02930 508 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 PTP4A2Q12974 167 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 ADGRE1Q14246 886 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 MYBPC2Q14324 1141 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 MBTPS1Q14703 1052 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 KIF22Q14807 665 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 CALCRLQ16602 461 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 LONRF1Q17RB8 773 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 PDCD4Q53EL6 469 aaKnown RBP7.05□□□□□ -1.28
USP28-207ENST00000538475 SLC44A4Q53GD3 710 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 DCAF12L1Q5VU92 463 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 PCNX4Q63HM2 1172 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 IGF2-ASQ6U949 168 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 ILDR2Q71H61 639 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 TXNRD3Q86VQ6 643 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 CHSY1Q86X52 802 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 CCNJLQ8IV13 435 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 ZBED8Q8IZ13 594 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 CCDC89Q8N998 374 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 ANKRD42Q8N9B4 389 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 SYT2Q8N9I0 419 aaPredicted RBP7.05□□□□□ -1.28
USP28-207ENST00000538475 PHC3Q8NDX5 983 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 CATSPER1Q8NEC5 780 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 NRG4Q8WWG1 115 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 APBB2Q92870 758 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 GLG1Q92896 1179 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 VPS50Q96JG6 964 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 RIOK1Q9BRS2 568 aaKnown RBP7.05□□□□□ -1.28
USP28-207ENST00000538475 SIKE1Q9BRV8 207 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 PBX4Q9BYU1 374 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 NRDE2Q9H7Z3 1164 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 LRRC4CQ9HCJ2 640 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 KRT82Q9NSB4 513 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 FAIMQ9NVQ4 179 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 BTBD7Q9P203 1132 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 LRP2BPQ9P2M1 347 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 UVRAGQ9P2Y5 699 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 EGFL7Q9UHF1 273 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 BARX2Q9UMQ3 279 aaPredicted RBP7.05□□□□□ -1.28
USP28-207ENST00000538475 DMTF1Q9Y222 760 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 PCDHA2Q9Y5H9 948 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 ALG6Q9Y672 507 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 MEGF6O75095 1541 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 RGPD3A6NKT7 1758 aaPredicted RBP7.05□□□□□ -1.28
USP28-207ENST00000538475 RGPD4Q7Z3J3 1758 aa7.05□□□□□ -1.28
USP28-207ENST00000538475 SHANK3Q9BYB0 1731 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 ZNF804BA4D1E1 1349 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 SPATA31A1Q5TZJ5 1347 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 FOCADQ5VW36 1801 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 SMIM23A6NLE4 172 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 ERVV-1B6SEH8 477 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 H0Y3Z8 333 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 P4HA2O15460 535 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 DENRO43583 198 aaKnown RBP7.04□□□□□ -1.28
USP28-207ENST00000538475 PRKAB2O43741 272 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 FZD6O60353 706 aa7.04□□□□□ -1.28
USP28-207ENST00000538475 CCNT1O60563 726 aaKnown RBP7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms