RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 ABCB6Q9NP58 842 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 TDP1Q9NUW8 608 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 INTS13Q9NVM9 706 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 ZMYM5Q9UJ78 669 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 RAB23Q9ULC3 237 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 ANK1P16157 1881 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 TSC2P49815 1807 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 ZNF292O60281 2723 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 ZNF233A6NK53 670 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 SOBPA7XYQ1 873 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 PRR5-ARHGAP8B1AHC4 643 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 TRDMT1O14717 391 aaKnown RBP9.07□□□□□ -0.96
USP28-203ENST00000537490 SPTLC2O15270 562 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 RETP07949 1114 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 LMO2P25791 158 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 HOXA6P31267 233 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 CNR2P34972 360 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 LHX1P48742 406 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 ARHGAP8P85298 464 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 LMNB2Q03252 620 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 E2F4Q16254 413 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 TMEM196Q5HYL7 178 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 NAIF1Q69YI7 327 aaPredicted RBP9.07□□□□□ -0.96
USP28-203ENST00000537490 FAM171BQ6P995 826 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 DPH6Q7L8W6 267 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 LIMS2Q7Z4I7 341 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 SPATA2LQ8IUW3 424 aaPredicted RBP9.07□□□□□ -0.96
USP28-203ENST00000537490 SCN4BQ8IWT1 228 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 SPATA18Q8TC71 538 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 KBTBD7Q8WVZ9 684 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 HPDLQ96IR7 371 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 ANKRD36BP1Q96IX9 119 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 MYRFLQ96LU7 910 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 SLC22A12Q96S37 553 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 CYP2S1Q96SQ9 504 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 TRIM9Q9C026 710 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 TNMDQ9H2S6 317 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 KIF9Q9HAQ2 790 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 KBTBD4Q9NVX7 518 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 POLR3BQ9NW08 1133 aaPredicted RBP9.07□□□□□ -0.96
USP28-203ENST00000537490 HSPBP1Q9NZL4 362 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 UXTQ9UBK9 157 aaPredicted RBP9.07□□□□□ -0.96
USP28-203ENST00000537490 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.07□□□□□ -0.96
USP28-203ENST00000537490 CACNA1AO00555 2505 aa9.07□□□□□ -0.96
USP28-203ENST00000537490 DCDC2BA2VCK2 349 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 K7ELQ4 463 aaPredicted RBP9.06□□□□□ -0.96
USP28-203ENST00000537490 KIAA0391O15091 583 aaKnown RBP9.06□□□□□ -0.96
USP28-203ENST00000537490 TGFB1I1O43294 461 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 PPP6R2O75170 966 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 CST3P01034 146 aaPredicted RBP9.06□□□□□ -0.96
USP28-203ENST00000537490 EGFP01133 1207 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 PDGFRBP09619 1106 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 SDHBP21912 280 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 PCSK1P29120 753 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 PXNP49023 591 aaPredicted RBP9.06□□□□□ -0.96
USP28-203ENST00000537490 GALK1P51570 392 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 PSMC1P62191 440 aaKnown RBP9.06□□□□□ -0.96
USP28-203ENST00000537490 FAM160A1Q05DH4 1040 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 GRSF1Q12849 480 aaKnown RBP eCLIP9.06□□□□□ -0.96
USP28-203ENST00000537490 MYO1EQ12965 1108 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 ZNF268Q14587 947 aaPredicted RBP9.06□□□□□ -0.96
USP28-203ENST00000537490 MTF1Q14872 753 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 SURF1Q15526 300 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 DUOXA2Q1HG44 320 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 CFAP221Q4G0U5 840 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 FOXD4L5Q5VV16 416 aaPredicted RBP9.06□□□□□ -0.96
USP28-203ENST00000537490 CC2D1AQ6P1N0 951 aaPredicted RBP9.06□□□□□ -0.96
USP28-203ENST00000537490 SHC4Q6S5L8 630 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 EPM2AIP1Q7L775 607 aaPredicted RBP9.06□□□□□ -0.96
USP28-203ENST00000537490 WDR5BQ86VZ2 330 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 RDH13Q8NBN7 331 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 ZNF507Q8TCN5 953 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 FOXD4L4Q8WXT5 416 aaPredicted RBP9.06□□□□□ -0.96
USP28-203ENST00000537490 MYLPFQ96A32 169 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 DHX58Q96C10 678 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 TRMT2BQ96GJ1 504 aaKnown RBP9.06□□□□□ -0.96
USP28-203ENST00000537490 FUBP3Q96I24 572 aaKnown RBP eCLIP9.06□□□□□ -0.96
USP28-203ENST00000537490 SYT15Q9BQS2 421 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 BACH2Q9BYV9 841 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 LRRC27Q9C0I9 530 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 TRPC7Q9HCX4 862 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 CRTAC1Q9NQ79 661 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 GCNT4Q9P109 453 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 MAGEC2Q9UBF1 373 aaPredicted RBP9.06□□□□□ -0.96
USP28-203ENST00000537490 CDV3Q9UKY7 258 aaKnown RBP9.06□□□□□ -0.96
USP28-203ENST00000537490 SSUH2Q9Y2M2 353 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 NME7Q9Y5B8 376 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 VPS13AQ96RL7 3174 aa9.06□□□□□ -0.96
USP28-203ENST00000537490 TRAV19A0A0A6YYK7 116 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 C2orf78A6NCI8 922 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 CLIC2O15247 247 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 EIF3DO15371 548 aaKnown RBP eCLIP9.05□□□□□ -0.96
USP28-203ENST00000537490 RNF40O75150 1001 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 TNNC2P02585 160 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 USP17L7P0C7H9 530 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 WARSP23381 471 aaKnown RBP9.05□□□□□ -0.96
USP28-203ENST00000537490 BDNFP23560 247 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 CASP1P29466 404 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 GJA4P35212 333 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 MAGEA11P43364 429 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms