RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 C4orf50Q6ZRC1 276 aa12.84□□□□□ -0.35
CHD4-203ENST00000535717 C12orf29Q8N999 325 aa12.84□□□□□ -0.35
CHD4-203ENST00000535717 SLC4A11Q8NBS3 891 aa12.84□□□□□ -0.35
CHD4-203ENST00000535717 SMG7Q92540 1137 aaKnown RBP12.84□□□□□ -0.35
CHD4-203ENST00000535717 FUBP3Q96I24 572 aaKnown RBP eCLIP12.84□□□□□ -0.35
CHD4-203ENST00000535717 SEPT5Q99719 369 aaPredicted RBP12.84□□□□□ -0.35
CHD4-203ENST00000535717 LSM14BQ9BX40 385 aaKnown RBP12.84□□□□□ -0.35
CHD4-203ENST00000535717 RTN4Q9NQC3 1192 aaKnown RBP12.84□□□□□ -0.35
CHD4-203ENST00000535717 AJAP1Q9UKB5 411 aaPredicted RBP12.84□□□□□ -0.35
CHD4-203ENST00000535717 USP15Q9Y4E8 981 aaPredicted RBP12.84□□□□□ -0.35
CHD4-203ENST00000535717 RNF225M0QZC1 329 aaPredicted RBP12.83□□□□□ -0.36
CHD4-203ENST00000535717 CLDN5O00501 218 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 TEX33O43247 280 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 XYLBO75191 536 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 LRG1P02750 347 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 POU2F2P09086 479 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 CCDC130P13994 396 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 ATF6P18850 670 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 BDNFP23560 247 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 TUFMP49411 452 aaKnown RBP12.83□□□□□ -0.36
CHD4-203ENST00000535717 KCNQ1P51787 676 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 MFAP3P55082 362 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 MRPS5P82675 430 aaKnown RBP12.83□□□□□ -0.36
CHD4-203ENST00000535717 UBXN1Q04323 297 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 SYCP1Q15431 976 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 MGAT5BQ3V5L5 792 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 KLHDC7AQ5VTJ3 777 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 PTCRAQ6ISU1 281 aaPredicted RBP12.83□□□□□ -0.36
CHD4-203ENST00000535717 TMEM270Q6UE05 265 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 CYP26C1Q6V0L0 522 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 PAQR9Q6ZVX9 377 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 ENOSF1Q7L5Y1 443 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 FUKQ8N0W3 1084 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 RNF214Q8ND24 703 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 ATXN2LQ8WWM7 1075 aaKnown RBP12.83□□□□□ -0.36
CHD4-203ENST00000535717 SUSD6Q92537 303 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 JAKMIP2Q96AA8 810 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 TMEM176AQ96HP8 235 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 NAP1L5Q96NT1 182 aaPredicted RBP12.83□□□□□ -0.36
CHD4-203ENST00000535717 ZNF518BQ9C0D4 1074 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 FAM49BQ9NUQ9 324 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 CEP72Q9P209 647 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 SIK3Q9Y2K2 1263 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 PCDHB4Q9Y5E5 795 aa12.83□□□□□ -0.36
CHD4-203ENST00000535717 C2orf16Q68DN1 1984 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 A0A1B0GTH6 734 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 SERPINC1P01008 464 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 MAGEA11P43364 429 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 ALDH1A3P47895 512 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 GPR15P49685 360 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 ZNF132P52740 706 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 CACNA2D1P54289 1103 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 EPHB3P54753 998 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 FANCCQ00597 558 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 PLD1Q13393 1074 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 DDR2Q16832 855 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 ARHGAP44Q17R89 818 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 AAK1Q2M2I8 961 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 PUS10Q3MIT2 529 aaKnown RBP12.82□□□□□ -0.36
CHD4-203ENST00000535717 ATAT1Q5SQI0 421 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 IQCEQ6IPM2 695 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 FAM35AQ86V20 835 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 SLC2A14Q8TDB8 520 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 FAM81BQ96LP2 452 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 HEXIM2Q96MH2 286 aaKnown RBP12.82□□□□□ -0.36
CHD4-203ENST00000535717 ASB2Q96Q27 587 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 ERGIC2Q96RQ1 377 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 MED10Q9BTT4 135 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 DNAI2Q9GZS0 605 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 PIDD1Q9HB75 910 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 PLCB1Q9NQ66 1216 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 TMEM30AQ9NV96 361 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 HCFC1R1Q9NWW0 138 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 DNAJC12Q9UKB3 198 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 CNTN6Q9UQ52 1028 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 PTPRDP23468 1912 aa12.82□□□□□ -0.36
CHD4-203ENST00000535717 DOCK6Q96HP0 2047 aa12.81□□□□□ -0.36
CHD4-203ENST00000535717 NOL4O94818 638 aa12.81□□□□□ -0.36
CHD4-203ENST00000535717 SLC34A2O95436 690 aa12.81□□□□□ -0.36
CHD4-203ENST00000535717 CALCAP01258 141 aa12.81□□□□□ -0.36
CHD4-203ENST00000535717 KRT5P13647 590 aa12.81□□□□□ -0.36
CHD4-203ENST00000535717 UCHL3P15374 230 aa12.81□□□□□ -0.36
CHD4-203ENST00000535717 TRIM21P19474 475 aaKnown RBP12.81□□□□□ -0.36
CHD4-203ENST00000535717 MTHFRP42898 656 aa12.81□□□□□ -0.36
CHD4-203ENST00000535717 RPL10AP62906 217 aaKnown RBP12.81□□□□□ -0.36
CHD4-203ENST00000535717 NTHL1P78549 312 aa12.81□□□□□ -0.36
CHD4-203ENST00000535717 CBX2Q14781 532 aaPredicted RBP12.81□□□□□ -0.36
CHD4-203ENST00000535717 NR1I3Q14994 352 aa12.81□□□□□ -0.36
CHD4-203ENST00000535717 SMAD2Q15796 467 aaKnown RBP12.81□□□□□ -0.36
CHD4-203ENST00000535717 PTPN21Q16825 1174 aa12.81□□□□□ -0.36
CHD4-203ENST00000535717 FILIP1LQ4L180 1135 aa12.81□□□□□ -0.36
CHD4-203ENST00000535717 SDHAF4Q5VUM1 108 aa12.81□□□□□ -0.36
CHD4-203ENST00000535717 VSTM1Q6UX27 236 aa12.81□□□□□ -0.36
CHD4-203ENST00000535717 GRASPQ7Z6J2 395 aaPredicted RBP12.81□□□□□ -0.36
CHD4-203ENST00000535717 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.81□□□□□ -0.36
CHD4-203ENST00000535717 SCN4BQ8IWT1 228 aa12.81□□□□□ -0.36
CHD4-203ENST00000535717 RBBP8NLQ8NC74 664 aaPredicted RBP12.81□□□□□ -0.36
CHD4-203ENST00000535717 GPR152Q8TDT2 470 aa12.81□□□□□ -0.36
CHD4-203ENST00000535717 GIPC2Q8TF65 315 aa12.81□□□□□ -0.36
CHD4-203ENST00000535717 SHC3Q92529 594 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms