RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 DPP3Q9NY33 737 aa16.94■□□□□ 0.3
CHMP4A-207ENST00000533523 AGO2Q9UKV8 859 aaKnown RBP16.94■□□□□ 0.3
CHMP4A-207ENST00000533523 PCDHA7Q9UN72 937 aa16.94■□□□□ 0.3
CHMP4A-207ENST00000533523 SLC8A2Q9UPR5 921 aa16.94■□□□□ 0.3
CHMP4A-207ENST00000533523 CCL26Q9Y258 94 aa16.94■□□□□ 0.3
CHMP4A-207ENST00000533523 C2CD2Q9Y426 696 aa16.94■□□□□ 0.3
CHMP4A-207ENST00000533523 THADAQ6YHU6 1953 aa16.94■□□□□ 0.3
CHMP4A-207ENST00000533523 ABCA7Q8IZY2 2146 aa16.94■□□□□ 0.3
CHMP4A-207ENST00000533523 RPP40O75818 363 aaKnown RBP16.93■□□□□ 0.3
CHMP4A-207ENST00000533523 PTMSP20962 102 aa16.93■□□□□ 0.3
CHMP4A-207ENST00000533523 HOXA6P31267 233 aa16.93■□□□□ 0.3
CHMP4A-207ENST00000533523 STAT6P42226 847 aa16.93■□□□□ 0.3
CHMP4A-207ENST00000533523 TSPY1Q01534 308 aa16.93■□□□□ 0.3
CHMP4A-207ENST00000533523 SV2CQ496J9 727 aa16.93■□□□□ 0.3
CHMP4A-207ENST00000533523 ZC2HC1CQ53FD0 456 aaPredicted RBP16.93■□□□□ 0.3
CHMP4A-207ENST00000533523 SV2BQ7L1I2 683 aa16.93■□□□□ 0.3
CHMP4A-207ENST00000533523 EFCAB13Q8IY85 973 aa16.93■□□□□ 0.3
CHMP4A-207ENST00000533523 DCP1BQ8IZD4 617 aaKnown RBP16.93■□□□□ 0.3
CHMP4A-207ENST00000533523 TTC16Q8NEE8 873 aa16.93■□□□□ 0.3
CHMP4A-207ENST00000533523 GAB3Q8WWW8 586 aa16.93■□□□□ 0.3
CHMP4A-207ENST00000533523 ZNF560Q96MR9 790 aa16.93■□□□□ 0.3
CHMP4A-207ENST00000533523 FIZ1Q96SL8 496 aa16.93■□□□□ 0.3
CHMP4A-207ENST00000533523 ARRDC1-AS1Q9H2J1 176 aa16.93■□□□□ 0.3
CHMP4A-207ENST00000533523 EBF3Q9H4W6 596 aa16.93■□□□□ 0.3
CHMP4A-207ENST00000533523 ASB7Q9H672 318 aa16.93■□□□□ 0.3
CHMP4A-207ENST00000533523 HPS4Q9NQG7 708 aa16.93■□□□□ 0.3
CHMP4A-207ENST00000533523 MAGED2Q9UNF1 606 aaPredicted RBP16.93■□□□□ 0.3
CHMP4A-207ENST00000533523 PTPRDP23468 1912 aa16.93■□□□□ 0.3
CHMP4A-207ENST00000533523 GOLGA6L4A6NEF3 574 aa16.92■□□□□ 0.3
CHMP4A-207ENST00000533523 CUTAO60888 179 aa16.92■□□□□ 0.3
CHMP4A-207ENST00000533523 EPN2O95208 641 aa16.92■□□□□ 0.3
CHMP4A-207ENST00000533523 ARSAP15289 507 aa16.92■□□□□ 0.3
CHMP4A-207ENST00000533523 GPR15P49685 360 aa16.92■□□□□ 0.3
CHMP4A-207ENST00000533523 NLRP12P59046 1061 aa16.92■□□□□ 0.3
CHMP4A-207ENST00000533523 UBE2HP62256 183 aa16.92■□□□□ 0.3
CHMP4A-207ENST00000533523 SHC2P98077 582 aa16.92■□□□□ 0.3
CHMP4A-207ENST00000533523 GTF2BQ00403 316 aa16.92■□□□□ 0.3
CHMP4A-207ENST00000533523 SMARCB1Q12824 385 aa16.92■□□□□ 0.3
CHMP4A-207ENST00000533523 RUNX3Q13761 415 aa16.92■□□□□ 0.3
CHMP4A-207ENST00000533523 FSTL4Q6MZW2 842 aa16.92■□□□□ 0.3
CHMP4A-207ENST00000533523 CACNA2D4Q7Z3S7 1137 aa16.92■□□□□ 0.3
CHMP4A-207ENST00000533523 KBTBD6Q86V97 674 aa16.92■□□□□ 0.3
CHMP4A-207ENST00000533523 LRRTM3Q86VH5 581 aa16.92■□□□□ 0.3
CHMP4A-207ENST00000533523 POMGNT1Q8WZA1 660 aa16.92■□□□□ 0.3
CHMP4A-207ENST00000533523 DDX1Q92499 740 aaKnown RBP16.92■□□□□ 0.3
CHMP4A-207ENST00000533523 PI4K2AQ9BTU6 479 aa16.92■□□□□ 0.3
CHMP4A-207ENST00000533523 TMEM121BQ9BXQ6 578 aaPredicted RBP16.92■□□□□ 0.3
CHMP4A-207ENST00000533523 KIF9Q9HAQ2 790 aa16.92■□□□□ 0.3
CHMP4A-207ENST00000533523 ZMYM5Q9UJ78 669 aa16.92■□□□□ 0.3
CHMP4A-207ENST00000533523 PCDHB5Q9Y5E4 795 aa16.92■□□□□ 0.3
CHMP4A-207ENST00000533523 GON4LQ3T8J9 2241 aa16.92■□□□□ 0.3
CHMP4A-207ENST00000533523 RNF40O75150 1001 aa16.91■□□□□ 0.3
CHMP4A-207ENST00000533523 DDX6P26196 483 aaKnown RBP eCLIP16.91■□□□□ 0.3
CHMP4A-207ENST00000533523 TMEM196Q5HYL7 178 aa16.91■□□□□ 0.3
CHMP4A-207ENST00000533523 SDHAF4Q5VUM1 108 aa16.91■□□□□ 0.3
CHMP4A-207ENST00000533523 TXNDC8Q6A555 127 aa16.91■□□□□ 0.3
CHMP4A-207ENST00000533523 SLFN12LQ6IEE8 588 aa16.91■□□□□ 0.3
CHMP4A-207ENST00000533523 CC2D1AQ6P1N0 951 aaPredicted RBP16.91■□□□□ 0.3
CHMP4A-207ENST00000533523 TMEM150AQ86TG1 271 aa16.91■□□□□ 0.3
CHMP4A-207ENST00000533523 MRPS31Q92665 395 aaKnown RBP16.91■□□□□ 0.3
CHMP4A-207ENST00000533523 USP13Q92995 863 aaPredicted RBP16.91■□□□□ 0.3
CHMP4A-207ENST00000533523 HHIPQ96QV1 700 aa16.91■□□□□ 0.3
CHMP4A-207ENST00000533523 LRRC27Q9C0I9 530 aa16.91■□□□□ 0.3
CHMP4A-207ENST00000533523 IKZF4Q9H2S9 585 aa16.91■□□□□ 0.3
CHMP4A-207ENST00000533523 CUEDC2Q9H467 287 aa16.91■□□□□ 0.3
CHMP4A-207ENST00000533523 SMOC1Q9H4F8 434 aa16.91■□□□□ 0.3
CHMP4A-207ENST00000533523 TDP1Q9NUW8 608 aa16.91■□□□□ 0.3
CHMP4A-207ENST00000533523 SEL1LQ9UBV2 794 aa16.91■□□□□ 0.3
CHMP4A-207ENST00000533523 ANGPTL2Q9UKU9 493 aa16.91■□□□□ 0.3
CHMP4A-207ENST00000533523 MYOFQ9NZM1 2061 aa16.9■□□□□ 0.3
CHMP4A-207ENST00000533523 OTOL1A6NHN0 477 aaPredicted RBP16.9■□□□□ 0.3
CHMP4A-207ENST00000533523 KPNA7A9QM74 516 aa16.9■□□□□ 0.3
CHMP4A-207ENST00000533523 ATG13O75143 517 aa16.9■□□□□ 0.3
CHMP4A-207ENST00000533523 EGFP01133 1207 aa16.9■□□□□ 0.3
CHMP4A-207ENST00000533523 HMGA1P17096 107 aaKnown RBP16.9■□□□□ 0.3
CHMP4A-207ENST00000533523 GAP43P17677 238 aa16.9■□□□□ 0.3
CHMP4A-207ENST00000533523 NAIF1Q69YI7 327 aaPredicted RBP16.9■□□□□ 0.3
CHMP4A-207ENST00000533523 SFR1Q86XK3 245 aa16.9■□□□□ 0.3
CHMP4A-207ENST00000533523 RIN3Q8TB24 985 aa16.9■□□□□ 0.3
CHMP4A-207ENST00000533523 CHFRQ96EP1 664 aa16.9■□□□□ 0.3
CHMP4A-207ENST00000533523 LOXL4Q96JB6 756 aa16.9■□□□□ 0.3
CHMP4A-207ENST00000533523 FAM83CQ9BQN1 747 aa16.9■□□□□ 0.3
CHMP4A-207ENST00000533523 TRPC7Q9HCX4 862 aa16.9■□□□□ 0.3
CHMP4A-207ENST00000533523 TMLHEQ9NVH6 421 aa16.9■□□□□ 0.3
CHMP4A-207ENST00000533523 POLR3BQ9NW08 1133 aaPredicted RBP16.9■□□□□ 0.3
CHMP4A-207ENST00000533523 WASF3Q9UPY6 502 aa16.9■□□□□ 0.3
CHMP4A-207ENST00000533523 PI4KAP42356 2102 aa16.9■□□□□ 0.3
CHMP4A-207ENST00000533523 A0A1W2PQ27 194 aa16.89■□□□□ 0.29
CHMP4A-207ENST00000533523 A0A1W2PQ64 194 aa16.89■□□□□ 0.29
CHMP4A-207ENST00000533523 A0A1W2PQD8 194 aa16.89■□□□□ 0.29
CHMP4A-207ENST00000533523 C1QTNF9BB2RNN3 333 aa16.89■□□□□ 0.29
CHMP4A-207ENST00000533523 TRDMT1O14717 391 aaKnown RBP16.89■□□□□ 0.29
CHMP4A-207ENST00000533523 IL18RAPO95256 599 aa16.89■□□□□ 0.29
CHMP4A-207ENST00000533523 F11P03951 625 aa16.89■□□□□ 0.29
CHMP4A-207ENST00000533523 C1QTNF9P0C862 333 aa16.89■□□□□ 0.29
CHMP4A-207ENST00000533523 CSH1P0DML2 217 aa16.89■□□□□ 0.29
CHMP4A-207ENST00000533523 CSH2P0DML3 217 aa16.89■□□□□ 0.29
CHMP4A-207ENST00000533523 POLR2BP30876 1174 aaKnown RBP16.89■□□□□ 0.29
CHMP4A-207ENST00000533523 PNPLA4P41247 253 aa16.89■□□□□ 0.29
CHMP4A-207ENST00000533523 RAP1GAPP47736 663 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms