RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 KLRC4O43908 158 aa16.53■□□□□ 0.24
CPSF1-211ENST00000533492 ATP2C2O75185 946 aa16.53■□□□□ 0.24
CPSF1-211ENST00000533492 CLSTN1O94985 981 aa16.53■□□□□ 0.24
CPSF1-211ENST00000533492 PRAMEF12O95522 483 aa16.53■□□□□ 0.24
CPSF1-211ENST00000533492 LMO2P25791 158 aa16.53■□□□□ 0.24
CPSF1-211ENST00000533492 SYKP43405 635 aa16.53■□□□□ 0.24
CPSF1-211ENST00000533492 TNNC1P63316 161 aa16.53■□□□□ 0.24
CPSF1-211ENST00000533492 PLCB2Q00722 1185 aa16.53■□□□□ 0.24
CPSF1-211ENST00000533492 STK4Q13043 487 aa16.53■□□□□ 0.24
CPSF1-211ENST00000533492 FZD5Q13467 585 aa16.53■□□□□ 0.24
CPSF1-211ENST00000533492 MAPRE1Q15691 268 aaKnown RBP16.53■□□□□ 0.24
CPSF1-211ENST00000533492 WDR72Q3MJ13 1102 aa16.53■□□□□ 0.24
CPSF1-211ENST00000533492 KMT5BQ4FZB7 885 aa16.53■□□□□ 0.24
CPSF1-211ENST00000533492 CFAP221Q4G0U5 840 aa16.53■□□□□ 0.24
CPSF1-211ENST00000533492 FAM171BQ6P995 826 aa16.53■□□□□ 0.24
CPSF1-211ENST00000533492 MAML2Q8IZL2 1156 aaPredicted RBP16.53■□□□□ 0.24
CPSF1-211ENST00000533492 CMTM8Q8IZV2 173 aa16.53■□□□□ 0.24
CPSF1-211ENST00000533492 STKLD1Q8NE28 680 aa16.53■□□□□ 0.24
CPSF1-211ENST00000533492 KBTBD7Q8WVZ9 684 aa16.53■□□□□ 0.24
CPSF1-211ENST00000533492 CCDC47Q96A33 483 aaKnown RBP16.53■□□□□ 0.24
CPSF1-211ENST00000533492 ZFYVE19Q96K21 471 aa16.53■□□□□ 0.24
CPSF1-211ENST00000533492 LRRC3BQ96PB8 259 aa16.53■□□□□ 0.24
CPSF1-211ENST00000533492 PKMYT1Q99640 499 aa16.53■□□□□ 0.24
CPSF1-211ENST00000533492 SMG9Q9H0W8 520 aaKnown RBP16.53■□□□□ 0.24
CPSF1-211ENST00000533492 SNX25Q9H3E2 840 aa16.53■□□□□ 0.24
CPSF1-211ENST00000533492 ZDHHC9Q9Y397 364 aa16.53■□□□□ 0.24
CPSF1-211ENST00000533492 FAM186AA6NE01 2351 aa16.52■□□□□ 0.24
CPSF1-211ENST00000533492 SOBPA7XYQ1 873 aa16.52■□□□□ 0.24
CPSF1-211ENST00000533492 MYL1P05976 194 aa16.52■□□□□ 0.24
CPSF1-211ENST00000533492 WARSP23381 471 aaKnown RBP16.52■□□□□ 0.24
CPSF1-211ENST00000533492 GNL1P36915 607 aaPredicted RBP16.52■□□□□ 0.24
CPSF1-211ENST00000533492 PSMC1P62191 440 aaKnown RBP16.52■□□□□ 0.24
CPSF1-211ENST00000533492 CYP27A1Q02318 531 aa16.52■□□□□ 0.24
CPSF1-211ENST00000533492 CCDC142Q17RM4 750 aa16.52■□□□□ 0.24
CPSF1-211ENST00000533492 ZNF528Q3MIS6 628 aa16.52■□□□□ 0.24
CPSF1-211ENST00000533492 TXNDC8Q6A555 127 aa16.52■□□□□ 0.24
CPSF1-211ENST00000533492 LIMS2Q7Z4I7 341 aa16.52■□□□□ 0.24
CPSF1-211ENST00000533492 OR6B3Q8NGW1 331 aa16.52■□□□□ 0.24
CPSF1-211ENST00000533492 TTC8Q8TAM2 541 aa16.52■□□□□ 0.24
CPSF1-211ENST00000533492 ATRIPQ8WXE1 791 aa16.52■□□□□ 0.24
CPSF1-211ENST00000533492 CHAMP1Q96JM3 812 aa16.52■□□□□ 0.24
CPSF1-211ENST00000533492 SCAND2PQ9GZW5 306 aaPredicted RBP16.52■□□□□ 0.24
CPSF1-211ENST00000533492 NUP210Q8TEM1 1887 aaPredicted RBP16.52■□□□□ 0.23
CPSF1-211ENST00000533492 ZNF638Q14966 1978 aaKnown RBP16.51■□□□□ 0.23
CPSF1-211ENST00000533492 VPS13AQ96RL7 3174 aa16.51■□□□□ 0.23
CPSF1-211ENST00000533492 KINO60870 393 aaKnown RBP16.51■□□□□ 0.23
CPSF1-211ENST00000533492 NOL4O94818 638 aa16.51■□□□□ 0.23
CPSF1-211ENST00000533492 FAM163BP0C2L3 166 aa16.51■□□□□ 0.23
CPSF1-211ENST00000533492 GRIK1P39086 918 aa16.51■□□□□ 0.23
CPSF1-211ENST00000533492 MAGEA11P43364 429 aa16.51■□□□□ 0.23
CPSF1-211ENST00000533492 SOX9P48436 509 aa16.51■□□□□ 0.23
CPSF1-211ENST00000533492 MTAPQ13126 283 aa16.51■□□□□ 0.23
CPSF1-211ENST00000533492 BIRC3Q13489 604 aa16.51■□□□□ 0.23
CPSF1-211ENST00000533492 PPP2R5DQ14738 602 aa16.51■□□□□ 0.23
CPSF1-211ENST00000533492 TMEM150AQ86TG1 271 aa16.51■□□□□ 0.23
CPSF1-211ENST00000533492 MON1AQ86VX9 555 aa16.51■□□□□ 0.23
CPSF1-211ENST00000533492 RALGPS2Q86X27 583 aaPredicted RBP16.51■□□□□ 0.23
CPSF1-211ENST00000533492 FSIP1Q8NA03 581 aa16.51■□□□□ 0.23
CPSF1-211ENST00000533492 KIAA0895Q8NCT3 520 aa16.51■□□□□ 0.23
CPSF1-211ENST00000533492 ZNF516Q92618 1163 aa16.51■□□□□ 0.23
CPSF1-211ENST00000533492 MYLPFQ96A32 169 aa16.51■□□□□ 0.23
CPSF1-211ENST00000533492 SYAP1Q96A49 352 aaPredicted RBP16.51■□□□□ 0.23
CPSF1-211ENST00000533492 TRMT2BQ96GJ1 504 aaKnown RBP16.51■□□□□ 0.23
CPSF1-211ENST00000533492 MYRFLQ96LU7 910 aa16.51■□□□□ 0.23
CPSF1-211ENST00000533492 MRPL45Q9BRJ2 306 aaKnown RBP16.51■□□□□ 0.23
CPSF1-211ENST00000533492 CHRDQ9H2X0 955 aa16.51■□□□□ 0.23
CPSF1-211ENST00000533492 TDP1Q9NUW8 608 aa16.51■□□□□ 0.23
CPSF1-211ENST00000533492 GTSE1Q9NYZ3 720 aa16.51■□□□□ 0.23
CPSF1-211ENST00000533492 NXF1Q9UBU9 619 aaKnown RBP16.51■□□□□ 0.23
CPSF1-211ENST00000533492 HPSEQ9Y251 543 aa16.51■□□□□ 0.23
CPSF1-211ENST00000533492 MYO15AQ9UKN7 3530 aa16.51■□□□□ 0.23
CPSF1-211ENST00000533492 SPECC1L-ADORA2AF8WAN1 911 aa16.5■□□□□ 0.23
CPSF1-211ENST00000533492 TACC1O75410 805 aa16.5■□□□□ 0.23
CPSF1-211ENST00000533492 KIF20AO95235 890 aa16.5■□□□□ 0.23
CPSF1-211ENST00000533492 RPN1P04843 607 aaKnown RBP16.5■□□□□ 0.23
CPSF1-211ENST00000533492 CHRNB1P11230 501 aa16.5■□□□□ 0.23
CPSF1-211ENST00000533492 BDNFP23560 247 aa16.5■□□□□ 0.23
CPSF1-211ENST00000533492 ANXA13P27216 316 aa16.5■□□□□ 0.23
CPSF1-211ENST00000533492 ATICP31939 592 aa16.5■□□□□ 0.23
CPSF1-211ENST00000533492 CASP4P49662 377 aa16.5■□□□□ 0.23
CPSF1-211ENST00000533492 NDUFA8P51970 172 aa16.5■□□□□ 0.23
CPSF1-211ENST00000533492 AP3M2P53677 418 aa16.5■□□□□ 0.23
CPSF1-211ENST00000533492 MYL6P60660 151 aa16.5■□□□□ 0.23
CPSF1-211ENST00000533492 LRRC32Q14392 662 aa16.5■□□□□ 0.23
CPSF1-211ENST00000533492 CC2D1AQ6P1N0 951 aaPredicted RBP16.5■□□□□ 0.23
CPSF1-211ENST00000533492 VSTM1Q6UX27 236 aa16.5■□□□□ 0.23
CPSF1-211ENST00000533492 ZNF687Q8N1G0 1237 aa16.5■□□□□ 0.23
CPSF1-211ENST00000533492 MYCBPAPQ8TBZ2 947 aa16.5■□□□□ 0.23
CPSF1-211ENST00000533492 IER2Q9BTL4 223 aa16.5■□□□□ 0.23
CPSF1-211ENST00000533492 KIF9Q9HAQ2 790 aa16.5■□□□□ 0.23
CPSF1-211ENST00000533492 TRPC7Q9HCX4 862 aa16.5■□□□□ 0.23
CPSF1-211ENST00000533492 CRTAC1Q9NQ79 661 aa16.5■□□□□ 0.23
CPSF1-211ENST00000533492 GKN1Q9NS71 199 aa16.5■□□□□ 0.23
CPSF1-211ENST00000533492 DENND4CQ5VZ89 1909 aa16.49■□□□□ 0.23
CPSF1-211ENST00000533492 A8MXQ7 604 aa16.49■□□□□ 0.23
CPSF1-211ENST00000533492 PDXKO00764 312 aa16.49■□□□□ 0.23
CPSF1-211ENST00000533492 CALUO43852 315 aaPredicted RBP16.49■□□□□ 0.23
CPSF1-211ENST00000533492 STAU1O95793 577 aaKnown RBP16.49■□□□□ 0.23
CPSF1-211ENST00000533492 CTHP32929 405 aa16.49■□□□□ 0.23
CPSF1-211ENST00000533492 TNK2Q07912 1038 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms