RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 LDLRAD3Q86YD5 345 aa4.67□□□□□ -1.66
CD44-233ENST00000531141 VRK3Q8IV63 474 aa4.67□□□□□ -1.66
CD44-233ENST00000531141 OR56A3Q8NH54 315 aa4.67□□□□□ -1.66
CD44-233ENST00000531141 SLC30A5Q8TAD4 765 aa4.67□□□□□ -1.66
CD44-233ENST00000531141 MYCBPAPQ8TBZ2 947 aa4.67□□□□□ -1.66
CD44-233ENST00000531141 SLC9A6Q92581 669 aa4.67□□□□□ -1.66
CD44-233ENST00000531141 CAVIN3Q969G5 261 aa4.67□□□□□ -1.66
CD44-233ENST00000531141 FAM136AQ96C01 138 aa4.67□□□□□ -1.66
CD44-233ENST00000531141 PGBD1Q96JS3 809 aa4.67□□□□□ -1.66
CD44-233ENST00000531141 ACTRT3Q9BYD9 372 aa4.67□□□□□ -1.66
CD44-233ENST00000531141 TPSD1Q9BZJ3 242 aa4.67□□□□□ -1.66
CD44-233ENST00000531141 PCED1AQ9H1Q7 454 aa4.67□□□□□ -1.66
CD44-233ENST00000531141 ZSCAN32Q9NX65 697 aa4.67□□□□□ -1.66
CD44-233ENST00000531141 CCDC194A0A1B0GVG4 234 aa4.66□□□□□ -1.66
CD44-233ENST00000531141 TMEM233B4DJY2 109 aa4.66□□□□□ -1.66
CD44-233ENST00000531141 YY2O15391 372 aa4.66□□□□□ -1.66
CD44-233ENST00000531141 CCP110O43303 1012 aa4.66□□□□□ -1.66
CD44-233ENST00000531141 KRT4P19013 534 aa4.66□□□□□ -1.66
CD44-233ENST00000531141 TM4SF4P48230 202 aa4.66□□□□□ -1.66
CD44-233ENST00000531141 SEC24CP53992 1094 aa4.66□□□□□ -1.66
CD44-233ENST00000531141 INHBCP55103 352 aa4.66□□□□□ -1.66
CD44-233ENST00000531141 INSCQ1MX18 579 aa4.66□□□□□ -1.66
CD44-233ENST00000531141 ARHGAP40Q5TG30 622 aa4.66□□□□□ -1.66
CD44-233ENST00000531141 VPS53Q5VIR6 699 aa4.66□□□□□ -1.66
CD44-233ENST00000531141 ICE2Q659A1 982 aa4.66□□□□□ -1.66
CD44-233ENST00000531141 LAIR1Q6GTX8 287 aa4.66□□□□□ -1.66
CD44-233ENST00000531141 SLC16A11Q8NCK7 471 aa4.66□□□□□ -1.66
CD44-233ENST00000531141 TOR1AIP2Q8NFQ8 470 aa4.66□□□□□ -1.66
CD44-233ENST00000531141 ACTRT2Q8TDY3 377 aa4.66□□□□□ -1.66
CD44-233ENST00000531141 IPCEF1Q8WWN9 437 aaPredicted RBP4.66□□□□□ -1.66
CD44-233ENST00000531141 ALG8Q9BVK2 526 aa4.66□□□□□ -1.66
CD44-233ENST00000531141 BRIP1Q9BX63 1249 aa4.66□□□□□ -1.66
CD44-233ENST00000531141 SCAND2PQ9GZW5 306 aaPredicted RBP4.66□□□□□ -1.66
CD44-233ENST00000531141 TOR3AQ9H497 397 aa4.66□□□□□ -1.66
CD44-233ENST00000531141 SERHLQ9NQF3 203 aa4.66□□□□□ -1.66
CD44-233ENST00000531141 LOC102723971A0A1B0GUV8 181 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 FOXN1O15353 648 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 MPPED1O15442 326 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 ORC4O43929 436 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 RHOBTB3O94955 611 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 INMTO95050 263 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 IL18RAPO95256 599 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 ESRRBO95718 433 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 FSHBP01225 129 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 TXNP10599 105 aaKnown RBP4.65□□□□□ -1.67
CD44-233ENST00000531141 IL1R1P14778 569 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 TSHRP16473 764 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 TYRP1P17643 537 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 ACVR2AP27037 513 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 FOLR3P41439 243 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 PIK3CBP42338 1070 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 CARSP49589 748 aaKnown RBP4.65□□□□□ -1.67
CD44-233ENST00000531141 PDE6CP51160 858 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 CASP5P51878 434 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 MRPS35P82673 323 aaKnown RBP4.65□□□□□ -1.67
CD44-233ENST00000531141 DPTQ07507 201 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 MYO1EQ12965 1108 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 E2F2Q14209 437 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 PTPRRQ15256 657 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 MAP9Q49MG5 647 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 PLA1AQ53H76 456 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 KIAA0895LQ68EN5 471 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 RGS7BPQ6MZT1 257 aaPredicted RBP4.65□□□□□ -1.67
CD44-233ENST00000531141 YAF2Q8IY57 180 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 RAPGEF4Q8WZA2 1011 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 FKBP10Q96AY3 582 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 FBXL20Q96IG2 436 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 PBKQ96KB5 322 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 STK31Q9BXU1 1019 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 AMBRA1Q9C0C7 1298 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 ZNF700Q9H0M5 742 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 DHX36Q9H2U1 1008 aaKnown RBP4.65□□□□□ -1.67
CD44-233ENST00000531141 XPNPEP3Q9NQH7 507 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 NDRG4Q9ULP0 352 aaKnown RBP4.65□□□□□ -1.67
CD44-233ENST00000531141 PADI4Q9UM07 663 aa4.65□□□□□ -1.67
CD44-233ENST00000531141 CCDC151A5D8V7 595 aa4.64□□□□□ -1.67
CD44-233ENST00000531141 RASA4BC9J798 803 aa4.64□□□□□ -1.67
CD44-233ENST00000531141 KPNA5O15131 536 aa4.64□□□□□ -1.67
CD44-233ENST00000531141 RASA4O43374 803 aa4.64□□□□□ -1.67
CD44-233ENST00000531141 TLR5O60602 858 aa4.64□□□□□ -1.67
CD44-233ENST00000531141 RAMP2O60895 175 aa4.64□□□□□ -1.67
CD44-233ENST00000531141 RASSF9O75901 435 aa4.64□□□□□ -1.67
CD44-233ENST00000531141 NXPH3O95157 252 aa4.64□□□□□ -1.67
CD44-233ENST00000531141 ANXA2P07355 339 aaKnown RBP4.64□□□□□ -1.67
CD44-233ENST00000531141 PARP1P09874 1014 aaKnown RBP4.64□□□□□ -1.67
CD44-233ENST00000531141 PRIM2P49643 509 aa4.64□□□□□ -1.67
CD44-233ENST00000531141 DGKEP52429 567 aa4.64□□□□□ -1.67
CD44-233ENST00000531141 ZNF543Q08ER8 600 aa4.64□□□□□ -1.67
CD44-233ENST00000531141 HDAC1Q13547 482 aaPredicted RBP4.64□□□□□ -1.67
CD44-233ENST00000531141 TXNRD1Q16881 649 aa4.64□□□□□ -1.67
CD44-233ENST00000531141 LONRF1Q17RB8 773 aa4.64□□□□□ -1.67
CD44-233ENST00000531141 ZIK1Q3SY52 487 aaPredicted RBP4.64□□□□□ -1.67
CD44-233ENST00000531141 ZNF618Q5T7W0 954 aa4.64□□□□□ -1.67
CD44-233ENST00000531141 SLC15A3Q8IY34 581 aa4.64□□□□□ -1.67
CD44-233ENST00000531141 SDR16C5Q8N3Y7 309 aa4.64□□□□□ -1.67
CD44-233ENST00000531141 BPIFB1Q8TDL5 484 aa4.64□□□□□ -1.67
CD44-233ENST00000531141 SMCR8Q8TEV9 937 aaPredicted RBP4.64□□□□□ -1.67
CD44-233ENST00000531141 ATRIPQ8WXE1 791 aa4.64□□□□□ -1.67
CD44-233ENST00000531141 IQCDQ96DY2 449 aa4.64□□□□□ -1.67
CD44-233ENST00000531141 SNX22Q96L94 193 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms