RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 LRRC52Q8N7C0 313 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 C1orf127Q8N9H9 656 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 OR5B17Q8NGF7 314 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 PARD3BQ8TEW8 1205 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 BORCS6Q96GS4 357 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 ZSWIM3Q96MP5 696 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 PRMT8Q9NR22 394 aaPredicted RBP10.87□□□□□ -0.67
VPS28-204ENST00000526054 ZSCAN32Q9NX65 697 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 RWDD2AQ9UIY3 292 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 AGAP1Q9UPQ3 857 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 PIAS3Q9Y6X2 628 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 CEP250Q9BV73 2442 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 NCANO14594 1321 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 SPTBN2O15020 2390 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 A0A1W2PRU2 124 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 OR6C75A6NL08 312 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 SHISA7A6NL88 538 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 PPEF2O14830 753 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 IKBKBO14920 756 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 ZNF263O14978 683 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 STX10O60499 249 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 PHACTR2O75167 634 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 VNN2O95498 520 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 ODC1P11926 461 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 VIPR2P41587 438 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 EPHB3P54753 998 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 LILRA4P59901 499 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 CLDN10P78369 228 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 MYO1EQ12965 1108 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 MTAPQ13126 283 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 TRPC3Q13507 836 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 DPCR1Q3MIW9 517 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 CCDC40Q4G0X9 1142 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 CT47A1Q5JQC4 288 aaPredicted RBP10.86□□□□□ -0.67
VPS28-204ENST00000526054 OVOS1Q6IE37 1185 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 TRAPPC11Q7Z392 1133 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 DGLUCYQ7Z3D6 616 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 ZBTB44Q8NCP5 570 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 SHKBP1Q8TBC3 707 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 PLEKHO2Q8TD55 490 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 FAM3CQ92520 227 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 SECISBP2LQ93073 1101 aaKnown RBP10.86□□□□□ -0.67
VPS28-204ENST00000526054 IER2Q9BTL4 223 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 GPR88Q9GZN0 384 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 CHRDQ9H2X0 955 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 TRPV4Q9HBA0 871 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 METTL14Q9HCE5 456 aaKnown RBP10.86□□□□□ -0.67
VPS28-204ENST00000526054 ZNF334Q9HCZ1 680 aaPredicted RBP10.86□□□□□ -0.67
VPS28-204ENST00000526054 TRPV5Q9NQA5 729 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 ANO10Q9NW15 660 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 TMEM63CQ9P1W3 806 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 ARMCX3Q9UH62 379 aaPredicted RBP10.86□□□□□ -0.67
VPS28-204ENST00000526054 SMG5Q9UPR3 1016 aaKnown RBP10.86□□□□□ -0.67
VPS28-204ENST00000526054 CACNA1AO00555 2505 aa10.86□□□□□ -0.67
VPS28-204ENST00000526054 MTMR11A4FU01 709 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 HEPACAM2A8MVW5 462 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 CLSTN1O94985 981 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 GNA14O95837 355 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 TRIM49P0CI25 452 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 TRIM49CP0CI26 452 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 TYMPP19971 482 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 ERCC5P28715 1186 aaPredicted RBP10.85□□□□□ -0.67
VPS28-204ENST00000526054 GTF2H1P32780 548 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 ALDH1A3P47895 512 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 DUSP4Q13115 394 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 GPR17Q13304 367 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 FZD5Q13467 585 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 PUM1Q14671 1186 aaKnown RBP eCLIP10.85□□□□□ -0.67
VPS28-204ENST00000526054 PPP2R5DQ14738 602 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 STX1AQ16623 288 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 TPD52L1Q16890 204 aaPredicted RBP10.85□□□□□ -0.67
VPS28-204ENST00000526054 SKOR2Q2VWA4 1001 aaPredicted RBP10.85□□□□□ -0.67
VPS28-204ENST00000526054 DCAF17Q5H9S7 520 aaPredicted RBP10.85□□□□□ -0.67
VPS28-204ENST00000526054 FILIP1Q7Z7B0 1213 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 METTL23Q86XA0 190 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 TMC8Q8IU68 726 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 YAF2Q8IY57 180 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 CSGALNACT1Q8TDX6 532 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 NELL1Q92832 810 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 E2F7Q96AV8 911 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 EEF2KMTQ96G04 330 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 HPDLQ96IR7 371 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 FAM84AQ96KN4 292 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 SENP8Q96LD8 212 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 DUSP9Q99956 384 aaKnown RBP10.85□□□□□ -0.67
VPS28-204ENST00000526054 FAM126AQ9BYI3 521 aaPredicted RBP10.85□□□□□ -0.67
VPS28-204ENST00000526054 GZF1Q9H116 711 aaPredicted RBP10.85□□□□□ -0.67
VPS28-204ENST00000526054 DNAJC25Q9H1X3 360 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 EPC1Q9H2F5 836 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 CRISPLD1Q9H336 500 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 SIX4Q9UIU6 781 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 DSEQ9UL01 958 aa10.85□□□□□ -0.67
VPS28-204ENST00000526054 F5P12259 2224 aa10.84□□□□□ -0.67
VPS28-204ENST00000526054 KPNA7A9QM74 516 aa10.84□□□□□ -0.67
VPS28-204ENST00000526054 ARNTLO00327 626 aa10.84□□□□□ -0.67
VPS28-204ENST00000526054 CYB561D2O14569 222 aa10.84□□□□□ -0.67
VPS28-204ENST00000526054 HUS1O60921 280 aa10.84□□□□□ -0.67
VPS28-204ENST00000526054 LILRB5O75023 590 aa10.84□□□□□ -0.67
VPS28-204ENST00000526054 LETM1O95202 739 aaPredicted RBP10.84□□□□□ -0.67
VPS28-204ENST00000526054 CCDC192P0DO97 292 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms