RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 PRAMEF27A3QJZ7 478 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 USP27XA6NNY8 438 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 C2CD4DB7Z1M9 353 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 SMIM24O75264 130 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 PRPF6O94906 941 aaKnown RBP5.39□□□□□ -1.55
CD44-218ENST00000525469 FAM107AO95990 144 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 CEACAM5P06731 702 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 ASGR2P07307 311 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 CTSHP09668 335 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 TROVE2P10155 538 aaKnown RBP eCLIP5.39□□□□□ -1.55
CD44-218ENST00000525469 TOP1P11387 765 aaKnown RBP5.39□□□□□ -1.55
CD44-218ENST00000525469 GSPT1P15170 499 aaKnown RBP5.39□□□□□ -1.55
CD44-218ENST00000525469 PDE6AP16499 860 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 HOXB8P17481 243 aaPredicted RBP5.39□□□□□ -1.55
CD44-218ENST00000525469 SDSP20132 328 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 DNAJB1P25685 340 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 CALML3P27482 149 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 MTHFRP42898 656 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 SLC1A4P43007 532 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 ST13P50502 369 aaKnown RBP5.39□□□□□ -1.55
CD44-218ENST00000525469 CCNG1P51959 295 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 IGBP1P78318 339 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 MTX1Q13505 466 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 BLMHQ13867 455 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 CAMK1Q14012 370 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 POSTNQ15063 836 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 TRIM71Q2Q1W2 868 aaKnown RBP5.39□□□□□ -1.55
CD44-218ENST00000525469 GLE1Q53GS7 698 aaKnown RBP5.39□□□□□ -1.55
CD44-218ENST00000525469 SPECC1Q5M775 1068 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 SPOUT1Q5T280 376 aaKnown RBP5.39□□□□□ -1.55
CD44-218ENST00000525469 SLFN13Q68D06 897 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 PPP4R3AQ6IN85 833 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 ANKRD54Q6NXT1 300 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 EMBQ6PCB8 327 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 TRIM65Q6PJ69 517 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 CWC27Q6UX04 472 aaKnown RBP5.39□□□□□ -1.55
CD44-218ENST00000525469 SYNE3Q6ZMZ3 975 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 OTUD6AQ7L8S5 288 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 RSPH3Q86UC2 560 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 MYLK4Q86YV6 388 aaPredicted RBP5.39□□□□□ -1.55
CD44-218ENST00000525469 CCDC13Q8IYE1 715 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 ZNF444Q8N0Y2 327 aaPredicted RBP5.39□□□□□ -1.55
CD44-218ENST00000525469 LCORLQ8N3X6 602 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 CCDC12Q8WUD4 166 aaPredicted RBP5.39□□□□□ -1.55
CD44-218ENST00000525469 SSH1Q8WYL5 1049 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 RSPH1Q8WYR4 309 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 CUL5Q93034 780 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 ATP6V0A1Q93050 837 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 RBM41Q96IZ5 413 aaKnown RBP5.39□□□□□ -1.55
CD44-218ENST00000525469 IFT74Q96LB3 600 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 MEIS3Q99687 375 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 SH3GL2Q99962 352 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 MAF1Q9H063 256 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 MIR1-1HGQ9H1L0 117 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 SMOC2Q9H3U7 446 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 ARMT1Q9H993 441 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 PARP2Q9UGN5 583 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 DBR1Q9UK59 544 aaKnown RBP5.39□□□□□ -1.55
CD44-218ENST00000525469 PPP2R2CQ9Y2T4 447 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 C15orf41Q9Y2V0 281 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 PCDHB12Q9Y5F1 795 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 ZNF532Q9HCE3 1301 aa5.39□□□□□ -1.55
CD44-218ENST00000525469 ANKRD11Q6UB99 2663 aaPredicted RBP5.39□□□□□ -1.55
CD44-218ENST00000525469 C17orf102A2RUQ5 167 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 LRRIQ3A6PVS8 624 aaPredicted RBP5.38□□□□□ -1.55
CD44-218ENST00000525469 HIP1O00291 1037 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 PRKAB2O43741 272 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 HSF2BPO75031 334 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 LRIG2O94898 1065 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 TTLL1O95922 423 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 EIF2S1P05198 315 aaKnown RBP5.38□□□□□ -1.55
CD44-218ENST00000525469 SP9P0CG40 484 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 ALDH3A1P30838 453 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 TXKP42681 527 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 SNAP25P60880 206 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 GNGT1P63211 74 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 DAB2P98082 770 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 PRKCQQ04759 706 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 UBE3AQ05086 875 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 FAM160A1Q05DH4 1040 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 PRPF4BQ13523 1007 aaKnown RBP5.38□□□□□ -1.55
CD44-218ENST00000525469 DUSP6Q16828 381 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 LY6KQ17RY6 165 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 PAN2Q504Q3 1202 aaKnown RBP5.38□□□□□ -1.55
CD44-218ENST00000525469 LARP1BQ659C4 914 aaKnown RBP5.38□□□□□ -1.55
CD44-218ENST00000525469 SDE2Q6IQ49 451 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 KDM7AQ6ZMT4 941 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 RNF207Q6ZRF8 634 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 TMC6Q7Z403 805 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 CROCCP2Q86T23 111 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 SERINC5Q86VE9 423 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 C12orf40Q86WS4 652 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 CMTR2Q8IYT2 770 aaKnown RBP5.38□□□□□ -1.55
CD44-218ENST00000525469 ZDHHC14Q8IZN3 488 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 ABI1Q8IZP0 508 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 FUKQ8N0W3 1084 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 NME8Q8N427 588 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 IGSF22Q8N9C0 903 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 GMCL1P1Q8NEA9 526 aa5.38□□□□□ -1.55
CD44-218ENST00000525469 DNERQ8NFT8 737 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms