RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 INTS6LQ5JSJ4 861 aaKnown RBP13.85□□□□□ -0.19
CPNE3-205ENST00000522240 VARS2Q5ST30 1063 aaKnown RBP13.85□□□□□ -0.19
CPNE3-205ENST00000522240 FAM171A1Q5VUB5 890 aa13.85□□□□□ -0.19
CPNE3-205ENST00000522240 ACAD10Q6JQN1 1059 aa13.85□□□□□ -0.19
CPNE3-205ENST00000522240 ZNF280DQ6N043 979 aa13.85□□□□□ -0.19
CPNE3-205ENST00000522240 DEFB123Q8N688 67 aa13.85□□□□□ -0.19
CPNE3-205ENST00000522240 TRIM11Q96F44 468 aa13.85□□□□□ -0.19
CPNE3-205ENST00000522240 TMEM169Q96HH4 297 aa13.85□□□□□ -0.19
CPNE3-205ENST00000522240 PPP1R13BQ96KQ4 1090 aa13.85□□□□□ -0.19
CPNE3-205ENST00000522240 RNPC3Q96LT9 517 aaKnown RBP13.85□□□□□ -0.19
CPNE3-205ENST00000522240 HERC2P3Q9BVR0 1158 aa13.85□□□□□ -0.19
CPNE3-205ENST00000522240 GPR62Q9BZJ7 368 aa13.85□□□□□ -0.19
CPNE3-205ENST00000522240 SPG21Q9NZD8 308 aa13.85□□□□□ -0.19
CPNE3-205ENST00000522240 TSPAN16Q9UKR8 245 aa13.85□□□□□ -0.19
CPNE3-205ENST00000522240 RWDD3Q9Y3V2 267 aa13.85□□□□□ -0.19
CPNE3-205ENST00000522240 ANKRD62A6NC57 917 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 OR6C75A6NL08 312 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 BTNL10A8MVZ5 291 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 NT5C1B-RDH14C9J2C7 533 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 H7C4K7 107 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 M0QYV0 167 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 HCRTO43612 131 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 KRT86O43790 486 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 TLL1O43897 1013 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 SOD2P04179 222 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 H2AFZP0C0S5 128 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 TMEM253P0C7T8 217 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 NSFP46459 744 aaKnown RBP13.84□□□□□ -0.19
CPNE3-205ENST00000522240 BCAT1P54687 386 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 PSMC1P62191 440 aaKnown RBP13.84□□□□□ -0.19
CPNE3-205ENST00000522240 TSPY1Q01534 308 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 GOLGA7BQ2TAP0 167 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 PKDCCQ504Y2 493 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 PPP1R26Q5T8A7 1209 aaPredicted RBP13.84□□□□□ -0.19
CPNE3-205ENST00000522240 NAA35Q5VZE5 725 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 ANKS3Q6ZW76 656 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 H2AFVQ71UI9 128 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 PASD1Q8IV76 773 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 REXO1L1PQ8IX06 675 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 GPR65Q8IYL9 337 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 C12orf29Q8N999 325 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 PIK3R5Q8WYR1 880 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 CYFIP2Q96F07 1278 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 PKMYT1Q99640 499 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 HNRNPABQ99729 332 aaKnown RBP13.84□□□□□ -0.19
CPNE3-205ENST00000522240 TTPALQ9BTX7 342 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 UBE2OQ9C0C9 1292 aaKnown RBP13.84□□□□□ -0.19
CPNE3-205ENST00000522240 CRTAC1Q9NQ79 661 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 FAM49BQ9NUQ9 324 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 HESX1Q9UBX0 185 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 PCDHB12Q9Y5F1 795 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 NLRC5Q86WI3 1866 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 NCANO14594 1321 aa13.84□□□□□ -0.19
CPNE3-205ENST00000522240 UNC80Q8N2C7 3258 aa13.83□□□□□ -0.2
CPNE3-205ENST00000522240 A0A0A6YYK5 440 aaPredicted RBP13.83□□□□□ -0.2
CPNE3-205ENST00000522240 CFHP08603 1231 aa13.83□□□□□ -0.2
CPNE3-205ENST00000522240 MYBL1P10243 752 aa13.83□□□□□ -0.2
CPNE3-205ENST00000522240 CCDC130P13994 396 aa13.83□□□□□ -0.2
CPNE3-205ENST00000522240 ACAT1P24752 427 aaKnown RBP13.83□□□□□ -0.2
CPNE3-205ENST00000522240 PLCB3Q01970 1234 aa13.83□□□□□ -0.2
CPNE3-205ENST00000522240 BST2Q10589 180 aaKnown RBP13.83□□□□□ -0.2
CPNE3-205ENST00000522240 KIF5AQ12840 1032 aa13.83□□□□□ -0.2
CPNE3-205ENST00000522240 USP41Q3LFD5 358 aa13.83□□□□□ -0.2
CPNE3-205ENST00000522240 ARHGAP29Q52LW3 1261 aa13.83□□□□□ -0.2
CPNE3-205ENST00000522240 MDH1BQ5I0G3 518 aa13.83□□□□□ -0.2
CPNE3-205ENST00000522240 C9orf50Q5SZB4 431 aa13.83□□□□□ -0.2
CPNE3-205ENST00000522240 KIAA0319Q5VV43 1072 aa13.83□□□□□ -0.2
CPNE3-205ENST00000522240 DENND1BQ6P3S1 775 aa13.83□□□□□ -0.2
CPNE3-205ENST00000522240 FAM171BQ6P995 826 aa13.83□□□□□ -0.2
CPNE3-205ENST00000522240 MON1BQ7L1V2 547 aa13.83□□□□□ -0.2
CPNE3-205ENST00000522240 PHF13Q86YI8 300 aaPredicted RBP13.83□□□□□ -0.2
CPNE3-205ENST00000522240 MSANTD4Q8NCY6 345 aa13.83□□□□□ -0.2
CPNE3-205ENST00000522240 C1orf131Q8NDD1 294 aaKnown RBP13.83□□□□□ -0.2
CPNE3-205ENST00000522240 OR10T2Q8NGX3 314 aa13.83□□□□□ -0.2
CPNE3-205ENST00000522240 MYCBPAPQ8TBZ2 947 aa13.83□□□□□ -0.2
CPNE3-205ENST00000522240 CTNNBL1Q8WYA6 563 aaPredicted RBP13.83□□□□□ -0.2
CPNE3-205ENST00000522240 VCPIP1Q96JH7 1222 aa13.83□□□□□ -0.2
CPNE3-205ENST00000522240 NOX5Q96PH1 765 aa13.83□□□□□ -0.2
CPNE3-205ENST00000522240 VN1R3Q9BXE9 311 aa13.83□□□□□ -0.2
CPNE3-205ENST00000522240 ZCWPW1Q9H0M4 648 aa13.83□□□□□ -0.2
CPNE3-205ENST00000522240 CHST7Q9NS84 486 aa13.83□□□□□ -0.2
CPNE3-205ENST00000522240 TAS2R14Q9NYV8 317 aa13.83□□□□□ -0.2
CPNE3-205ENST00000522240 GTF3C4Q9UKN8 822 aa13.83□□□□□ -0.2
CPNE3-205ENST00000522240 PTPRDP23468 1912 aa13.82□□□□□ -0.2
CPNE3-205ENST00000522240 USP27XA6NNY8 438 aa13.82□□□□□ -0.2
CPNE3-205ENST00000522240 ZNF500O60304 480 aaPredicted RBP13.82□□□□□ -0.2
CPNE3-205ENST00000522240 TBC1D4O60343 1298 aa13.82□□□□□ -0.2
CPNE3-205ENST00000522240 FTLP02792 175 aaPredicted RBP13.82□□□□□ -0.2
CPNE3-205ENST00000522240 CALB1P05937 261 aa13.82□□□□□ -0.2
CPNE3-205ENST00000522240 MMP8P22894 467 aa13.82□□□□□ -0.2
CPNE3-205ENST00000522240 ARHGAP25P42331 645 aa13.82□□□□□ -0.2
CPNE3-205ENST00000522240 GPD2P43304 727 aa13.82□□□□□ -0.2
CPNE3-205ENST00000522240 GALCP54803 685 aa13.82□□□□□ -0.2
CPNE3-205ENST00000522240 GSCP56915 257 aaPredicted RBP13.82□□□□□ -0.2
CPNE3-205ENST00000522240 SMARCB1Q12824 385 aa13.82□□□□□ -0.2
CPNE3-205ENST00000522240 CTXN3Q4LDR2 81 aa13.82□□□□□ -0.2
CPNE3-205ENST00000522240 RTP2Q5QGT7 225 aa13.82□□□□□ -0.2
CPNE3-205ENST00000522240 C4orf50Q6ZRC1 276 aa13.82□□□□□ -0.2
CPNE3-205ENST00000522240 DDX53Q86TM3 631 aaKnown RBP13.82□□□□□ -0.2
CPNE3-205ENST00000522240 FAM35AQ86V20 835 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms