RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 RPS6KL1Q9Y6S9 549 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 hCG_2014768A0A024R1R8 64 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 DNAJC6O75061 913 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 SPOCD1Q6ZMY3 1216 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 EXD1Q8NHP7 514 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 SPATA20Q8TB22 786 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 PAFAH2Q99487 392 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 CCDC90BQ9GZT6 254 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 RIPK2O43353 540 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 ZC3H11AO75152 810 aaKnown RBP eCLIP13.21□□□□□ -0.29
USP53-209ENST00000514665 EPHB2P29323 1055 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 GNL1P36915 607 aaPredicted RBP13.21□□□□□ -0.29
USP53-209ENST00000514665 HADHAP40939 763 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 DLG4P78352 724 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 CXCL9Q07325 125 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 CAPRIN1Q14444 709 aaKnown RBP13.21□□□□□ -0.29
USP53-209ENST00000514665 PDK1Q15118 436 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 TTC39BQ5VTQ0 682 aaPredicted RBP13.21□□□□□ -0.29
USP53-209ENST00000514665 PCNX4Q63HM2 1172 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 ABRAQ8N0Z2 381 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 NRBF2Q96F24 287 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 ZBTB45Q96K62 511 aaPredicted RBP13.21□□□□□ -0.29
USP53-209ENST00000514665 TCHHQ07283 1943 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 SEC24DO94855 1032 aaPredicted RBP13.21□□□□□ -0.29
USP53-209ENST00000514665 MCF2P10911 925 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 KCNA3P22001 575 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 GRIK1P39086 918 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 PTGER2P43116 358 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 SERPINB4P48594 390 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 MYBPC2Q14324 1141 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 IL31Q6EBC2 164 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 TMEM154Q6P9G4 183 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 LAYNQ6UX15 382 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 TAS2R42Q7RTR8 314 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 APOL2Q9BQE5 337 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 PXMP2Q9NR77 195 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 CHST7Q9NS84 486 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 DLGAP2Q9P1A6 1054 aa13.21□□□□□ -0.29
USP53-209ENST00000514665 SYF2O95926 243 aaKnown RBP13.21□□□□□ -0.3
USP53-209ENST00000514665 NUMBP49757 651 aa13.21□□□□□ -0.3
USP53-209ENST00000514665 TTMPQ5BVD1 217 aa13.21□□□□□ -0.3
USP53-209ENST00000514665 FAM131BQ86XD5 332 aa13.21□□□□□ -0.3
USP53-209ENST00000514665 DACT3Q96B18 629 aaPredicted RBP13.21□□□□□ -0.3
USP53-209ENST00000514665 CGRRF1Q99675 332 aa13.21□□□□□ -0.3
USP53-209ENST00000514665 TRIM15Q9C019 465 aa13.21□□□□□ -0.3
USP53-209ENST00000514665 OLA1Q9NTK5 396 aaKnown RBP13.21□□□□□ -0.3
USP53-209ENST00000514665 PCDHAC2Q9Y5I4 1007 aa13.21□□□□□ -0.3
USP53-209ENST00000514665 UBTFL6P0CB48 400 aaPredicted RBP13.2□□□□□ -0.3
USP53-209ENST00000514665 NCAM1P13591 858 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 KCNA2P16389 499 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 PPARGP37231 505 aaPredicted RBP13.2□□□□□ -0.3
USP53-209ENST00000514665 BMPR2Q13873 1038 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 IMPG1Q17R60 797 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 MFSD7Q6UXD7 560 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 PTF1AQ7RTS3 328 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 GDF3Q9NR23 364 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 SMAPO00193 183 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 ANP32DO95626 131 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 SSTR1P30872 391 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 RCN1Q15293 331 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 MTDHQ86UE4 582 aaKnown RBP13.2□□□□□ -0.3
USP53-209ENST00000514665 GALNT4Q8N4A0 578 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 SLC25A41Q8N5S1 370 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 RXFP2Q8WXD0 754 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 IKZF4Q9H2S9 585 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 NDFIP2Q9NV92 336 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 AFF4Q9UHB7 1163 aaKnown RBP13.2□□□□□ -0.3
USP53-209ENST00000514665 PMPCBO75439 489 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 CYP2B6P20813 491 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 ACO1P21399 889 aaKnown RBP13.2□□□□□ -0.3
USP53-209ENST00000514665 TRADDQ15628 312 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 UGP2Q16851 508 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 KIZQ2M2Z5 673 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 LRP10Q7Z4F1 713 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 ATPAF2Q8N5M1 289 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 DNAJC18Q9H819 358 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 BATF3Q9NR55 127 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 DDIT4Q9NX09 232 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 ARHGEF38Q9NXL2 777 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 DPP3Q9NY33 737 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 FRMPD4Q14CM0 1322 aa13.2□□□□□ -0.3
USP53-209ENST00000514665 M0QYT0 321 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 MEIS2O14770 477 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 TNPO2O14787 897 aaKnown RBP13.19□□□□□ -0.3
USP53-209ENST00000514665 CXCL8P10145 99 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 PECAM1P16284 738 aaPredicted RBP13.19□□□□□ -0.3
USP53-209ENST00000514665 C6orf10Q5SRN2 563 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 DENND5BQ6ZUT9 1274 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 C1orf186Q6ZWK4 172 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 PPHLN1Q8NEY8 458 aaKnown RBP13.19□□□□□ -0.3
USP53-209ENST00000514665 FAM172AQ8WUF8 416 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 ELMO2Q96JJ3 720 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 MAGEB18Q96M61 343 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 KCNK16Q96T55 309 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 ANKRD63C9JTQ0 380 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 KLHL2O95198 593 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 MYL2P10916 166 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 PYGBP11216 843 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 MARCKSL1P49006 195 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 AMPD2Q01433 879 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms