RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 CCDC33Q8N5R6 958 aa21.91■■□□□ 1.1
SQSTM1-215ENST00000514093 DPP3Q9NY33 737 aa21.91■■□□□ 1.1
SQSTM1-215ENST00000514093 LHX6Q9UPM6 363 aa21.91■■□□□ 1.1
SQSTM1-215ENST00000514093 MYO16Q9Y6X6 1858 aa21.91■■□□□ 1.1
SQSTM1-215ENST00000514093 OBSL1O75147 1896 aa21.9■■□□□ 1.1
SQSTM1-215ENST00000514093 K7ENM7 598 aa21.9■■□□□ 1.1
SQSTM1-215ENST00000514093 PIGRP01833 764 aa21.9■■□□□ 1.1
SQSTM1-215ENST00000514093 CSH1P0DML2 217 aa21.9■■□□□ 1.1
SQSTM1-215ENST00000514093 CSH2P0DML3 217 aa21.9■■□□□ 1.1
SQSTM1-215ENST00000514093 PRPHP41219 470 aa21.9■■□□□ 1.1
SQSTM1-215ENST00000514093 HYIQ5T013 277 aa21.9■■□□□ 1.1
SQSTM1-215ENST00000514093 MYCT1Q8N699 235 aa21.9■■□□□ 1.1
SQSTM1-215ENST00000514093 FAM184AQ8NB25 1140 aa21.9■■□□□ 1.1
SQSTM1-215ENST00000514093 USP33Q8TEY7 942 aa21.9■■□□□ 1.1
SQSTM1-215ENST00000514093 ATP2A3Q93084 1043 aa21.9■■□□□ 1.1
SQSTM1-215ENST00000514093 CIZ1Q9ULV3 898 aaPredicted RBP21.9■■□□□ 1.1
SQSTM1-215ENST00000514093 DERAQ9Y315 318 aa21.9■■□□□ 1.1
SQSTM1-215ENST00000514093 SOBPA7XYQ1 873 aa21.89■■□□□ 1.09
SQSTM1-215ENST00000514093 TISP43B9A030 160 aa21.89■■□□□ 1.09
SQSTM1-215ENST00000514093 ANKRD63C9JTQ0 380 aa21.89■■□□□ 1.09
SQSTM1-215ENST00000514093 K7EQS6 105 aa21.89■■□□□ 1.09
SQSTM1-215ENST00000514093 TULP1O00294 542 aaPredicted RBP21.89■■□□□ 1.09
SQSTM1-215ENST00000514093 LAD1O00515 517 aa21.89■■□□□ 1.09
SQSTM1-215ENST00000514093 CKMP06732 381 aa21.89■■□□□ 1.09
SQSTM1-215ENST00000514093 CYP2F1P24903 491 aa21.89■■□□□ 1.09
SQSTM1-215ENST00000514093 MAPK8P45983 427 aa21.89■■□□□ 1.09
SQSTM1-215ENST00000514093 DHX8Q14562 1220 aaKnown RBP21.89■■□□□ 1.09
SQSTM1-215ENST00000514093 ZC2HC1CQ53FD0 456 aaPredicted RBP21.89■■□□□ 1.09
SQSTM1-215ENST00000514093 ARMCX6Q7L4S7 300 aa21.89■■□□□ 1.09
SQSTM1-215ENST00000514093 C11orf74Q86VG3 221 aa21.89■■□□□ 1.09
SQSTM1-215ENST00000514093 RASSF3Q86WH2 238 aa21.89■■□□□ 1.09
SQSTM1-215ENST00000514093 EFCAB13Q8IY85 973 aa21.89■■□□□ 1.09
SQSTM1-215ENST00000514093 ARL14EPQ8N8R7 260 aaPredicted RBP21.89■■□□□ 1.09
SQSTM1-215ENST00000514093 MDGA1Q8NFP4 955 aa21.89■■□□□ 1.09
SQSTM1-215ENST00000514093 RLN3Q8WXF3 142 aa21.89■■□□□ 1.09
SQSTM1-215ENST00000514093 REEP2Q9BRK0 252 aa21.89■■□□□ 1.09
SQSTM1-215ENST00000514093 LLPHQ9BRT6 129 aaKnown RBP21.89■■□□□ 1.09
SQSTM1-215ENST00000514093 EIF4ENIF1Q9NRA8 985 aaKnown RBP21.89■■□□□ 1.09
SQSTM1-215ENST00000514093 KCND2Q9NZV8 630 aa21.89■■□□□ 1.09
SQSTM1-215ENST00000514093 PKD1L2Q7Z442 2459 aa21.89■■□□□ 1.09
SQSTM1-215ENST00000514093 KIAA1549LQ6ZVL6 1849 aa21.89■■□□□ 1.09
SQSTM1-215ENST00000514093 SPAARA0A1B0GVQ0 90 aa21.88■■□□□ 1.09
SQSTM1-215ENST00000514093 KPNA7A9QM74 516 aa21.88■■□□□ 1.09
SQSTM1-215ENST00000514093 USP17L7P0C7H9 530 aa21.88■■□□□ 1.09
SQSTM1-215ENST00000514093 TRIM61Q5EBN2 209 aa21.88■■□□□ 1.09
SQSTM1-215ENST00000514093 FRMD1Q8N878 549 aa21.88■■□□□ 1.09
SQSTM1-215ENST00000514093 SH3RF2Q8TEC5 729 aa21.88■■□□□ 1.09
SQSTM1-215ENST00000514093 CDK5RAP3Q96JB5 506 aa21.88■■□□□ 1.09
SQSTM1-215ENST00000514093 CNOT6LQ96LI5 555 aaKnown RBP21.88■■□□□ 1.09
SQSTM1-215ENST00000514093 ASB7Q9H672 318 aa21.88■■□□□ 1.09
SQSTM1-215ENST00000514093 KLK13Q9UKR3 277 aa21.88■■□□□ 1.09
SQSTM1-215ENST00000514093 LIMCH1Q9UPQ0 1083 aa21.88■■□□□ 1.09
SQSTM1-215ENST00000514093 TCHHQ07283 1943 aa21.88■■□□□ 1.09
SQSTM1-215ENST00000514093 FASNP49327 2511 aaKnown RBP21.87■■□□□ 1.09
SQSTM1-215ENST00000514093 TRAV19A0A0A6YYK7 116 aa21.87■■□□□ 1.09
SQSTM1-215ENST00000514093 C2orf78A6NCI8 922 aa21.87■■□□□ 1.09
SQSTM1-215ENST00000514093 HNRNPLP14866 589 aaKnown RBP eCLIP21.87■■□□□ 1.099e-9■■■□□ 15.7
SQSTM1-215ENST00000514093 ACAT1P24752 427 aaKnown RBP21.87■■□□□ 1.09
SQSTM1-215ENST00000514093 TSPY1Q01534 308 aa21.87■■□□□ 1.09
SQSTM1-215ENST00000514093 USP4Q13107 963 aa21.87■■□□□ 1.09
SQSTM1-215ENST00000514093 NR1H3Q13133 447 aa21.87■■□□□ 1.09
SQSTM1-215ENST00000514093 CCDC142Q17RM4 750 aa21.87■■□□□ 1.09
SQSTM1-215ENST00000514093 ADALQ6DHV7 355 aa21.87■■□□□ 1.09
SQSTM1-215ENST00000514093 TMEM92Q6UXU6 159 aa21.87■■□□□ 1.09
SQSTM1-215ENST00000514093 LRRC15Q8TF66 581 aa21.87■■□□□ 1.09
SQSTM1-215ENST00000514093 KCNN1Q92952 543 aa21.87■■□□□ 1.09
SQSTM1-215ENST00000514093 CCSER1Q9C0I3 900 aa21.87■■□□□ 1.09
SQSTM1-215ENST00000514093 ZHX3Q9H4I2 956 aa21.87■■□□□ 1.09
SQSTM1-215ENST00000514093 TMEM74BQ9NUR3 256 aa21.87■■□□□ 1.09
SQSTM1-215ENST00000514093 C2CD2Q9Y426 696 aa21.87■■□□□ 1.09
SQSTM1-215ENST00000514093 ASCC3Q8N3C0 2202 aaKnown RBP21.86■■□□□ 1.09
SQSTM1-215ENST00000514093 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa21.86■■□□□ 1.09
SQSTM1-215ENST00000514093 VWA3AA6NCI4 1184 aa21.86■■□□□ 1.09
SQSTM1-215ENST00000514093 NOL4O94818 638 aa21.86■■□□□ 1.09
SQSTM1-215ENST00000514093 FAM13AO94988 1023 aa21.86■■□□□ 1.09
SQSTM1-215ENST00000514093 OPRD1P41143 372 aa21.86■■□□□ 1.09
SQSTM1-215ENST00000514093 RPL10AP62906 217 aaKnown RBP21.86■■□□□ 1.09
SQSTM1-215ENST00000514093 NFE2Q16621 373 aaPredicted RBP21.86■■□□□ 1.09
SQSTM1-215ENST00000514093 GPBP1Q86WP2 473 aa21.86■■□□□ 1.09
SQSTM1-215ENST00000514093 TMEFF1Q8IYR6 380 aa21.86■■□□□ 1.09
SQSTM1-215ENST00000514093 IKZF4Q9H2S9 585 aa21.86■■□□□ 1.09
SQSTM1-215ENST00000514093 SLC32A1Q9H598 525 aa21.86■■□□□ 1.09
SQSTM1-215ENST00000514093 TMEM206Q9H813 350 aa21.86■■□□□ 1.09
SQSTM1-215ENST00000514093 FSCN3Q9NQT6 498 aa21.86■■□□□ 1.09
SQSTM1-215ENST00000514093 UXTQ9UBK9 157 aaPredicted RBP21.86■■□□□ 1.09
SQSTM1-215ENST00000514093 ODF2LQ9ULJ1 636 aa21.86■■□□□ 1.09
SQSTM1-215ENST00000514093 NEUROG3Q9Y4Z2 214 aa21.86■■□□□ 1.09
SQSTM1-215ENST00000514093 DMXL2Q8TDJ6 3036 aa21.85■■□□□ 1.09
SQSTM1-215ENST00000514093 MAP3K13O43283 966 aa21.85■■□□□ 1.09
SQSTM1-215ENST00000514093 TRAK2O60296 914 aa21.85■■□□□ 1.09
SQSTM1-215ENST00000514093 ENGP17813 658 aa21.85■■□□□ 1.09
SQSTM1-215ENST00000514093 PTGER3P43115 390 aa21.85■■□□□ 1.09
SQSTM1-215ENST00000514093 HMGN5P82970 282 aaKnown RBP21.85■■□□□ 1.09
SQSTM1-215ENST00000514093 LMAN2Q12907 356 aa21.85■■□□□ 1.09
SQSTM1-215ENST00000514093 CRY1Q16526 586 aa21.85■■□□□ 1.09
SQSTM1-215ENST00000514093 SV2CQ496J9 727 aa21.85■■□□□ 1.09
SQSTM1-215ENST00000514093 TMEM119Q4V9L6 283 aa21.85■■□□□ 1.09
SQSTM1-215ENST00000514093 SFTPA1Q8IWL2 248 aa21.85■■□□□ 1.09
SQSTM1-215ENST00000514093 PDCL2Q8N4E4 241 aa21.85■■□□□ 1.09
SQSTM1-215ENST00000514093 FNBP1Q96RU3 617 aa21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms