RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 SLC35F5Q8WV83 523 aa8.84□□□□□ -0.99
RNF4-220ENST00000513578 KBTBD7Q8WVZ9 684 aa8.84□□□□□ -0.99
RNF4-220ENST00000513578 PGBD4Q96DM1 585 aa8.84□□□□□ -0.99
RNF4-220ENST00000513578 RBM41Q96IZ5 413 aaKnown RBP8.84□□□□□ -0.99
RNF4-220ENST00000513578 PKNOX2Q96KN3 472 aa8.84□□□□□ -0.99
RNF4-220ENST00000513578 GLT1D1Q96MS3 346 aa8.84□□□□□ -0.99
RNF4-220ENST00000513578 NCAPGQ9BPX3 1015 aa8.84□□□□□ -0.99
RNF4-220ENST00000513578 APOL6Q9BWW8 343 aa8.84□□□□□ -0.99
RNF4-220ENST00000513578 AP1M1Q9BXS5 423 aa8.84□□□□□ -0.99
RNF4-220ENST00000513578 FAM129AQ9BZQ8 928 aa8.84□□□□□ -0.99
RNF4-220ENST00000513578 TRIM7Q9C029 511 aa8.84□□□□□ -0.99
RNF4-220ENST00000513578 DDX47Q9H0S4 455 aaKnown RBP8.84□□□□□ -0.99
RNF4-220ENST00000513578 RAB17Q9H0T7 212 aa8.84□□□□□ -0.99
RNF4-220ENST00000513578 AGO3Q9H9G7 860 aaKnown RBP8.84□□□□□ -0.99
RNF4-220ENST00000513578 EPB41L5Q9HCM4 733 aa8.84□□□□□ -0.99
RNF4-220ENST00000513578 HMX1Q9NP08 348 aaPredicted RBP8.84□□□□□ -0.99
RNF4-220ENST00000513578 FAM114A2Q9NRY5 505 aa8.84□□□□□ -0.99
RNF4-220ENST00000513578 DDX56Q9NY93 547 aaKnown RBP8.84□□□□□ -0.99
RNF4-220ENST00000513578 TSPAN16Q9UKR8 245 aa8.84□□□□□ -0.99
RNF4-220ENST00000513578 PADI3Q9ULW8 664 aa8.84□□□□□ -0.99
RNF4-220ENST00000513578 PHF24Q9UPV7 400 aa8.84□□□□□ -0.99
RNF4-220ENST00000513578 EFR3BQ9Y2G0 817 aa8.84□□□□□ -0.99
RNF4-220ENST00000513578 NME7Q9Y5B8 376 aa8.84□□□□□ -0.99
RNF4-220ENST00000513578 M0QYV0 167 aa8.83□□□□□ -1
RNF4-220ENST00000513578 PITPNM1O00562 1244 aa8.83□□□□□ -1
RNF4-220ENST00000513578 DPYSL4O14531 572 aa8.83□□□□□ -1
RNF4-220ENST00000513578 SPTLC1O15269 473 aa8.83□□□□□ -1
RNF4-220ENST00000513578 HUS1O60921 280 aa8.83□□□□□ -1
RNF4-220ENST00000513578 ERBB2P04626 1255 aa8.83□□□□□ -1
RNF4-220ENST00000513578 INHAP05111 366 aa8.83□□□□□ -1
RNF4-220ENST00000513578 THP07101 528 aa8.83□□□□□ -1
RNF4-220ENST00000513578 MYBL2P10244 700 aa8.83□□□□□ -1
RNF4-220ENST00000513578 SSTR3P32745 418 aaPredicted RBP8.83□□□□□ -1
RNF4-220ENST00000513578 GNL1P36915 607 aaPredicted RBP8.83□□□□□ -1
RNF4-220ENST00000513578 COILP38432 576 aaPredicted RBP8.83□□□□□ -1
RNF4-220ENST00000513578 THPOP40225 353 aa8.83□□□□□ -1
RNF4-220ENST00000513578 AARSP49588 968 aaKnown RBP eCLIP8.83□□□□□ -1
RNF4-220ENST00000513578 VEGFBP49765 207 aa8.83□□□□□ -1
RNF4-220ENST00000513578 TAS2R40P59535 323 aa8.83□□□□□ -1
RNF4-220ENST00000513578 PSMC1P62191 440 aaKnown RBP8.83□□□□□ -1
RNF4-220ENST00000513578 RPL7AP62424 266 aaKnown RBP8.83□□□□□ -1
RNF4-220ENST00000513578 SLC7A5Q01650 507 aa8.83□□□□□ -1
RNF4-220ENST00000513578 OGDHQ02218 1023 aa8.83□□□□□ -1
RNF4-220ENST00000513578 GUCY2DQ02846 1103 aa8.83□□□□□ -1
RNF4-220ENST00000513578 NFX1Q12986 1120 aaKnown RBP8.83□□□□□ -1
RNF4-220ENST00000513578 KLF1Q13351 362 aaPredicted RBP8.83□□□□□ -1
RNF4-220ENST00000513578 LPIN1Q14693 890 aa8.83□□□□□ -1
RNF4-220ENST00000513578 TAZQ16635 292 aa8.83□□□□□ -1
RNF4-220ENST00000513578 C2CD6Q53TS8 623 aa8.83□□□□□ -1
RNF4-220ENST00000513578 SPDYCQ5MJ68 293 aa8.83□□□□□ -1
RNF4-220ENST00000513578 PPP1R26Q5T8A7 1209 aaPredicted RBP8.83□□□□□ -1
RNF4-220ENST00000513578 PRPF38BQ5VTL8 546 aaKnown RBP8.83□□□□□ -1
RNF4-220ENST00000513578 DUPD1Q68J44 220 aa8.83□□□□□ -1
RNF4-220ENST00000513578 TRAF7Q6Q0C0 670 aa8.83□□□□□ -1
RNF4-220ENST00000513578 AGMOQ6ZNB7 445 aa8.83□□□□□ -1
RNF4-220ENST00000513578 SYDE1Q6ZW31 735 aaPredicted RBP8.83□□□□□ -1
RNF4-220ENST00000513578 ZDHHC14Q8IZN3 488 aa8.83□□□□□ -1
RNF4-220ENST00000513578 ANKRD52Q8NB46 1076 aa8.83□□□□□ -1
RNF4-220ENST00000513578 CASKIN2Q8WXE0 1202 aa8.83□□□□□ -1
RNF4-220ENST00000513578 TNIP3Q96KP6 325 aa8.83□□□□□ -1
RNF4-220ENST00000513578 UROC1Q96N76 676 aa8.83□□□□□ -1
RNF4-220ENST00000513578 MCEEQ96PE7 176 aa8.83□□□□□ -1
RNF4-220ENST00000513578 CPXM1Q96SM3 734 aa8.83□□□□□ -1
RNF4-220ENST00000513578 TSPYL2Q9H2G4 693 aaPredicted RBP8.83□□□□□ -1
RNF4-220ENST00000513578 KLK14Q9P0G3 267 aa8.83□□□□□ -1
RNF4-220ENST00000513578 RASAL2Q9UJF2 1139 aa8.83□□□□□ -1
RNF4-220ENST00000513578 NR2E1Q9Y466 385 aa8.83□□□□□ -1
RNF4-220ENST00000513578 PTPRDP23468 1912 aa8.83□□□□□ -1
RNF4-220ENST00000513578 A8MXQ7 604 aa8.82□□□□□ -1
RNF4-220ENST00000513578 ZMYND10O75800 440 aa8.82□□□□□ -1
RNF4-220ENST00000513578 EOMESO95936 686 aa8.82□□□□□ -1
RNF4-220ENST00000513578 KRT7P08729 469 aa8.82□□□□□ -1
RNF4-220ENST00000513578 CTSHP09668 335 aa8.82□□□□□ -1
RNF4-220ENST00000513578 RARAP10276 462 aa8.82□□□□□ -1
RNF4-220ENST00000513578 FGFR1P11362 822 aa8.82□□□□□ -1
RNF4-220ENST00000513578 COL6A1P12109 1028 aa8.82□□□□□ -1
RNF4-220ENST00000513578 CD52P31358 61 aa8.82□□□□□ -1
RNF4-220ENST00000513578 GRK4P32298 578 aa8.82□□□□□ -1
RNF4-220ENST00000513578 RFC1P35251 1148 aaPredicted RBP8.82□□□□□ -1
RNF4-220ENST00000513578 PCK1P35558 622 aa8.82□□□□□ -1
RNF4-220ENST00000513578 ACADSBP45954 432 aa8.82□□□□□ -1
RNF4-220ENST00000513578 CARSP49589 748 aaKnown RBP8.82□□□□□ -1
RNF4-220ENST00000513578 CDK7P50613 346 aa8.82□□□□□ -1
RNF4-220ENST00000513578 ZNF143P52747 638 aaPredicted RBP8.82□□□□□ -1
RNF4-220ENST00000513578 FAM189BP81408 668 aa8.82□□□□□ -1
RNF4-220ENST00000513578 DR1Q01658 176 aa8.82□□□□□ -1
RNF4-220ENST00000513578 BST2Q10589 180 aaKnown RBP8.82□□□□□ -1
RNF4-220ENST00000513578 GPS2Q13227 327 aa8.82□□□□□ -1
RNF4-220ENST00000513578 CCNG2Q16589 344 aa8.82□□□□□ -1
RNF4-220ENST00000513578 HADHQ16836 314 aaKnown RBP8.82□□□□□ -1
RNF4-220ENST00000513578 GOLGA7BQ2TAP0 167 aa8.82□□□□□ -1
RNF4-220ENST00000513578 CYP4A22Q5TCH4 519 aa8.82□□□□□ -1
RNF4-220ENST00000513578 AADACL2Q6P093 401 aa8.82□□□□□ -1
RNF4-220ENST00000513578 DRICH1Q6PGQ1 229 aaPredicted RBP8.82□□□□□ -1
RNF4-220ENST00000513578 PHLDB2Q86SQ0 1253 aa8.82□□□□□ -1
RNF4-220ENST00000513578 ACOT1Q86TX2 421 aa8.82□□□□□ -1
RNF4-220ENST00000513578 ZNF598Q86UK7 904 aaKnown RBP8.82□□□□□ -1
RNF4-220ENST00000513578 TTC30AQ86WT1 665 aa8.82□□□□□ -1
RNF4-220ENST00000513578 OR6B3Q8NGW1 331 aa8.82□□□□□ -1
RNF4-220ENST00000513578 MAGOHBQ96A72 148 aaKnown RBP8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms