RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 STKLD1Q8NE28 680 aa11.82□□□□□ -0.52
DDX41-216ENST00000513562 KCNN1Q92952 543 aa11.82□□□□□ -0.52
DDX41-216ENST00000513562 SPACA7Q96KW9 195 aa11.82□□□□□ -0.52
DDX41-216ENST00000513562 TMEM206Q9H813 350 aa11.82□□□□□ -0.52
DDX41-216ENST00000513562 RPF1Q9H9Y2 349 aaKnown RBP11.82□□□□□ -0.52
DDX41-216ENST00000513562 MBD1Q9UIS9 605 aaPredicted RBP11.82□□□□□ -0.52
DDX41-216ENST00000513562 PILRBQ9UKJ0 227 aa11.82□□□□□ -0.52
DDX41-216ENST00000513562 TRIP11Q15643 1979 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 PP2D1A8MPX8 630 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 CYB561D2O14569 222 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 OGTO15294 1046 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 NOL4O94818 638 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 CKMP06732 381 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 NFICP08651 508 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 USP17L7P0C7H9 530 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 CHRM1P11229 460 aaPredicted RBP11.81□□□□□ -0.52
DDX41-216ENST00000513562 TCF3P15923 654 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 CDC25AP30304 524 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 OPRD1P41143 372 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 GPR15P49685 360 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 NR1H3Q13133 447 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 COL28A1Q2UY09 1125 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 LYSMD4Q5XG99 296 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 WSCD1Q658N2 575 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 LMBRD2Q68DH5 695 aaPredicted RBP11.81□□□□□ -0.52
DDX41-216ENST00000513562 CD302Q8IX05 232 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 EFCAB13Q8IY85 973 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 TMEFF1Q8IYR6 380 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 DCP1BQ8IZD4 617 aaKnown RBP11.81□□□□□ -0.52
DDX41-216ENST00000513562 HDDC3Q8N4P3 179 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 CCDC33Q8N5R6 958 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 WHAMMQ8TF30 809 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 RLN3Q8WXF3 142 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 BICD1Q96G01 975 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 TRMT2BQ96GJ1 504 aaKnown RBP11.81□□□□□ -0.52
DDX41-216ENST00000513562 MYRFLQ96LU7 910 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 SLC22A12Q96S37 553 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 CCSER1Q9C0I3 900 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 UXTQ9UBK9 157 aaPredicted RBP11.81□□□□□ -0.52
DDX41-216ENST00000513562 MAGED2Q9UNF1 606 aaPredicted RBP11.81□□□□□ -0.52
DDX41-216ENST00000513562 DERAQ9Y315 318 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 PCDHB5Q9Y5E4 795 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 ATXN2Q99700 1313 aaKnown RBP11.81□□□□□ -0.52
DDX41-216ENST00000513562 TSC2P49815 1807 aa11.81□□□□□ -0.52
DDX41-216ENST00000513562 IGSF10Q6WRI0 2623 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 TRAV19A0A0A6YYK7 116 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 H0YCG3 227 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 NFATC1O95644 943 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 TRAPPC10P48553 1259 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 TAF6P49848 677 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 LIG4P49917 911 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 ATXN3P54252 364 aaPredicted RBP11.8□□□□□ -0.52
DDX41-216ENST00000513562 NCKAP1LP55160 1127 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 MRPS21P82921 87 aaKnown RBP11.8□□□□□ -0.52
DDX41-216ENST00000513562 GUCY1B3Q02153 619 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 RAD51AP2Q09MP3 1159 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 HNRNPDQ14103 355 aaKnown RBP11.8□□□□□ -0.52
DDX41-216ENST00000513562 TMEM132DQ14C87 1099 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 NFE2Q16621 373 aaPredicted RBP11.8□□□□□ -0.52
DDX41-216ENST00000513562 GAB4Q2WGN9 574 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 MAP7D1Q3KQU3 841 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 SDHAF4Q5VUM1 108 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 KRT79Q5XKE5 535 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 TTC30AQ86WT1 665 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 FRMD1Q8N878 549 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 TTC16Q8NEE8 873 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 SH3RF2Q8TEC5 729 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 LEO1Q8WVC0 666 aaPredicted RBP11.8□□□□□ -0.52
DDX41-216ENST00000513562 CYP2S1Q96SQ9 504 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 PYM1Q9BRP8 204 aaKnown RBP11.8□□□□□ -0.52
DDX41-216ENST00000513562 PI4K2AQ9BTU6 479 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 MMTAG2Q9BU76 263 aaKnown RBP11.8□□□□□ -0.52
DDX41-216ENST00000513562 RAB34Q9BZG1 259 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 LINC00597Q9H2U6 94 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 FOXP1Q9H334 677 aaPredicted RBP11.8□□□□□ -0.52
DDX41-216ENST00000513562 CAPN10Q9HC96 672 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 TRPC7Q9HCX4 862 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 FSCN3Q9NQT6 498 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 TMLHEQ9NVH6 421 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 GCNT4Q9P109 453 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 CPSF3Q9UKF6 684 aaKnown RBP11.8□□□□□ -0.52
DDX41-216ENST00000513562 SLC6A14Q9UN76 642 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 C2CD2Q9Y426 696 aa11.8□□□□□ -0.52
DDX41-216ENST00000513562 ASH1LQ9NR48 2969 aaKnown RBP11.8□□□□□ -0.52
DDX41-216ENST00000513562 A0A0B4J269 797 aa11.79□□□□□ -0.52
DDX41-216ENST00000513562 HNRNPDLO14979 420 aaKnown RBP11.79□□□□□ -0.52
DDX41-216ENST00000513562 MAP3K13O43283 966 aa11.79□□□□□ -0.52
DDX41-216ENST00000513562 OPHN1O60890 802 aa11.79□□□□□ -0.52
DDX41-216ENST00000513562 PRPF40AO75400 957 aaKnown RBP11.79□□□□□ -0.52
DDX41-216ENST00000513562 PIGRP01833 764 aa11.79□□□□□ -0.52
DDX41-216ENST00000513562 CFIP05156 583 aa11.79□□□□□ -0.52
DDX41-216ENST00000513562 CD59P13987 128 aa11.79□□□□□ -0.52
DDX41-216ENST00000513562 ITPKAP23677 461 aa11.79□□□□□ -0.52
DDX41-216ENST00000513562 GFPT1Q06210 699 aaPredicted RBP11.79□□□□□ -0.52
DDX41-216ENST00000513562 NBR1Q14596 966 aa11.79□□□□□ -0.52
DDX41-216ENST00000513562 DUOXA1Q1HG43 343 aa11.79□□□□□ -0.52
DDX41-216ENST00000513562 HSF5Q4G112 596 aaPredicted RBP11.79□□□□□ -0.52
DDX41-216ENST00000513562 ZC2HC1CQ53FD0 456 aaPredicted RBP11.79□□□□□ -0.52
DDX41-216ENST00000513562 ALLCQ8N6M5 410 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms