RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 CLDN5O00501 218 aa31.47■■■□□ 2.63
LIMCH1-211ENST00000509638 CALCAP01258 141 aa31.47■■■□□ 2.63
LIMCH1-211ENST00000509638 C8AP07357 584 aa31.47■■■□□ 2.63
LIMCH1-211ENST00000509638 SRGAP2BP0DMP2 458 aa31.47■■■□□ 2.63
LIMCH1-211ENST00000509638 VSTM4Q8IW00 320 aa31.47■■■□□ 2.63
LIMCH1-211ENST00000509638 TCEAL8Q8IYN2 117 aa31.47■■■□□ 2.63
LIMCH1-211ENST00000509638 FAM71AQ8IYT1 594 aa31.47■■■□□ 2.63
LIMCH1-211ENST00000509638 FUKQ8N0W3 1084 aa31.47■■■□□ 2.63
LIMCH1-211ENST00000509638 SLC2A14Q8TDB8 520 aa31.47■■■□□ 2.63
LIMCH1-211ENST00000509638 FUBP3Q96I24 572 aaKnown RBP eCLIP31.47■■■□□ 2.63
LIMCH1-211ENST00000509638 ZNF518BQ9C0D4 1074 aa31.47■■■□□ 2.63
LIMCH1-211ENST00000509638 CLDND1Q9NY35 253 aa31.47■■■□□ 2.63
LIMCH1-211ENST00000509638 MAFFQ9ULX9 164 aa31.47■■■□□ 2.63
LIMCH1-211ENST00000509638 SLC27A5Q9Y2P5 690 aa31.47■■■□□ 2.63
LIMCH1-211ENST00000509638 ZNF75DP51815 510 aa31.46■■■□□ 2.63
LIMCH1-211ENST00000509638 COL19A1Q14993 1142 aa31.46■■■□□ 2.63
LIMCH1-211ENST00000509638 FIGNQ5HY92 759 aa31.46■■■□□ 2.63
LIMCH1-211ENST00000509638 SPECC1LQ69YQ0 1117 aa31.46■■■□□ 2.63
LIMCH1-211ENST00000509638 ELMSAN1Q6PJG2 1045 aa31.46■■■□□ 2.63
LIMCH1-211ENST00000509638 FAM35AQ86V20 835 aa31.46■■■□□ 2.63
LIMCH1-211ENST00000509638 SEPT5Q99719 369 aaPredicted RBP31.46■■■□□ 2.63
LIMCH1-211ENST00000509638 MED10Q9BTT4 135 aa31.46■■■□□ 2.63
LIMCH1-211ENST00000509638 DPP7Q9UHL4 492 aa31.46■■■□□ 2.63
LIMCH1-211ENST00000509638 SPDYE4A6NLX3 237 aa31.45■■■□□ 2.63
LIMCH1-211ENST00000509638 CYP26A1O43174 497 aa31.45■■■□□ 2.63
LIMCH1-211ENST00000509638 NCK2O43639 380 aa31.45■■■□□ 2.63
LIMCH1-211ENST00000509638 CYP2F1P24903 491 aa31.45■■■□□ 2.63
LIMCH1-211ENST00000509638 ADAM15Q13444 863 aa31.45■■■□□ 2.63
LIMCH1-211ENST00000509638 CTC1Q2NKJ3 1217 aa31.45■■■□□ 2.63
LIMCH1-211ENST00000509638 SGO2Q562F6 1265 aa31.45■■■□□ 2.63
LIMCH1-211ENST00000509638 EP400NLQ6ZTU2 488 aa31.45■■■□□ 2.63
LIMCH1-211ENST00000509638 CCDC149Q6ZUS6 474 aa31.45■■■□□ 2.63
LIMCH1-211ENST00000509638 CYFIP2Q96F07 1278 aa31.45■■■□□ 2.63
LIMCH1-211ENST00000509638 ACP6Q9NPH0 428 aa31.45■■■□□ 2.63
LIMCH1-211ENST00000509638 DZANK1Q9NVP4 752 aa31.45■■■□□ 2.63
LIMCH1-211ENST00000509638 YIPF1Q9Y548 306 aa31.45■■■□□ 2.63
LIMCH1-211ENST00000509638 INSL5Q9Y5Q6 135 aa31.45■■■□□ 2.63
LIMCH1-211ENST00000509638 ATP8B3O60423 1300 aa31.45■■■□□ 2.62
LIMCH1-211ENST00000509638 PATJQ8NI35 1801 aa31.45■■■□□ 2.62
LIMCH1-211ENST00000509638 TBX10O75333 385 aa31.44■■■□□ 2.62
LIMCH1-211ENST00000509638 SOAT2O75908 522 aa31.44■■■□□ 2.62
LIMCH1-211ENST00000509638 BDNFP23560 247 aa31.44■■■□□ 2.62
LIMCH1-211ENST00000509638 BRD2P25440 801 aaKnown RBP31.44■■■□□ 2.62
LIMCH1-211ENST00000509638 ADORA2BP29275 332 aa31.44■■■□□ 2.62
LIMCH1-211ENST00000509638 MGAT5BQ3V5L5 792 aa31.44■■■□□ 2.62
LIMCH1-211ENST00000509638 PPP1R26Q5T8A7 1209 aaPredicted RBP31.44■■■□□ 2.62
LIMCH1-211ENST00000509638 SMYD5Q6GMV2 418 aa31.44■■■□□ 2.62
LIMCH1-211ENST00000509638 TMEM184AQ6ZMB5 413 aa31.44■■■□□ 2.62
LIMCH1-211ENST00000509638 GPIHBP1Q8IV16 184 aa31.44■■■□□ 2.62
LIMCH1-211ENST00000509638 HDAC7Q8WUI4 952 aa31.44■■■□□ 2.62
LIMCH1-211ENST00000509638 BAP1Q92560 729 aa31.44■■■□□ 2.62
LIMCH1-211ENST00000509638 PABPC5Q96DU9 382 aaKnown RBP31.44■■■□□ 2.62
LIMCH1-211ENST00000509638 NUP58Q9BVL2 599 aa31.44■■■□□ 2.62
LIMCH1-211ENST00000509638 KRT82Q9NSB4 513 aa31.44■■■□□ 2.62
LIMCH1-211ENST00000509638 HSFX1Q9UBD0 423 aa31.44■■■□□ 2.62
LIMCH1-211ENST00000509638 VDRP11473 427 aa31.43■■■□□ 2.62
LIMCH1-211ENST00000509638 GNA15P30679 374 aa31.43■■■□□ 2.62
LIMCH1-211ENST00000509638 SKIV2LQ15477 1246 aaKnown RBP31.43■■■□□ 2.62
LIMCH1-211ENST00000509638 PAQR9Q6ZVX9 377 aa31.43■■■□□ 2.62
LIMCH1-211ENST00000509638 TFAP2BQ92481 460 aa31.43■■■□□ 2.62
LIMCH1-211ENST00000509638 MRFAP1L1Q96HT8 127 aa31.43■■■□□ 2.62
LIMCH1-211ENST00000509638 GOLGA6L3A6NEY3 463 aa31.43■■■□□ 2.62
LIMCH1-211ENST00000509638 RFPL2O75678 378 aa31.43■■■□□ 2.62
LIMCH1-211ENST00000509638 GFPT2O94808 682 aa31.43■■■□□ 2.62
LIMCH1-211ENST00000509638 GYPCP04921 128 aa31.43■■■□□ 2.62
LIMCH1-211ENST00000509638 SOX5P35711 763 aa31.43■■■□□ 2.62
LIMCH1-211ENST00000509638 STAT1P42224 750 aa31.43■■■□□ 2.62
LIMCH1-211ENST00000509638 SMARCD1Q96GM5 515 aa31.43■■■□□ 2.62
LIMCH1-211ENST00000509638 HNRNPABQ99729 332 aaKnown RBP31.43■■■□□ 2.62
LIMCH1-211ENST00000509638 C2orf16Q68DN1 1984 aa31.42■■■□□ 2.62
LIMCH1-211ENST00000509638 C5orf42Q9H799 3197 aa31.42■■■□□ 2.62
LIMCH1-211ENST00000509638 HAPLN1P10915 354 aaPredicted RBP31.42■■■□□ 2.62
LIMCH1-211ENST00000509638 CLCN1P35523 988 aa31.42■■■□□ 2.62
LIMCH1-211ENST00000509638 PPM1LQ5SGD2 360 aa31.42■■■□□ 2.62
LIMCH1-211ENST00000509638 ARHGAP17Q68EM7 881 aa31.42■■■□□ 2.62
LIMCH1-211ENST00000509638 SLC47A2Q86VL8 602 aa31.42■■■□□ 2.62
LIMCH1-211ENST00000509638 MAFAQ8NHW3 353 aaPredicted RBP31.42■■■□□ 2.62
LIMCH1-211ENST00000509638 IQCDQ96DY2 449 aa31.42■■■□□ 2.62
LIMCH1-211ENST00000509638 ZSWIM1Q9BR11 485 aa31.42■■■□□ 2.62
LIMCH1-211ENST00000509638 SFXN1Q9H9B4 322 aa31.42■■■□□ 2.62
LIMCH1-211ENST00000509638 KIAA1257Q9ULG3 409 aa31.42■■■□□ 2.62
LIMCH1-211ENST00000509638 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP31.42■■■□□ 2.62
LIMCH1-211ENST00000509638 A0A1W2PQJ5 194 aa31.41■■■□□ 2.62
LIMCH1-211ENST00000509638 LRRC53A6NM62 1247 aa31.41■■■□□ 2.62
LIMCH1-211ENST00000509638 O00370 1275 aa31.41■■■□□ 2.62
LIMCH1-211ENST00000509638 ZMYND10O75800 440 aa31.41■■■□□ 2.62
LIMCH1-211ENST00000509638 MAGEA11P43364 429 aa31.41■■■□□ 2.62
LIMCH1-211ENST00000509638 CACNA2D1P54289 1103 aa31.41■■■□□ 2.62
LIMCH1-211ENST00000509638 DLX2Q07687 328 aaPredicted RBP31.41■■■□□ 2.62
LIMCH1-211ENST00000509638 GOLGA7BQ2TAP0 167 aa31.41■■■□□ 2.62
LIMCH1-211ENST00000509638 EDEM3Q9BZQ6 932 aa31.41■■■□□ 2.62
LIMCH1-211ENST00000509638 TMEM30AQ9NV96 361 aa31.41■■■□□ 2.62
LIMCH1-211ENST00000509638 CLEC1BQ9P126 229 aa31.41■■■□□ 2.62
LIMCH1-211ENST00000509638 THAP12O43422 761 aa31.4■■■□□ 2.62
LIMCH1-211ENST00000509638 AP1G2O75843 785 aa31.4■■■□□ 2.62
LIMCH1-211ENST00000509638 FAM200BP0CF97 657 aa31.4■■■□□ 2.62
LIMCH1-211ENST00000509638 TUFMP49411 452 aaKnown RBP31.4■■■□□ 2.62
LIMCH1-211ENST00000509638 PTK2Q05397 1052 aa31.4■■■□□ 2.62
LIMCH1-211ENST00000509638 TWF1Q12792 350 aa31.4■■■□□ 2.62
LIMCH1-211ENST00000509638 ANKRD54Q6NXT1 300 aa31.4■■■□□ 2.62
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms