RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 C4BPAP04003 597 aaKnown RBP19.2■□□□□ 0.66
TPM3-220ENST00000509601 RPN1P04843 607 aaKnown RBP19.2■□□□□ 0.66
TPM3-220ENST00000509601 SP9P0CG40 484 aa19.2■□□□□ 0.66
TPM3-220ENST00000509601 CSH1P0DML2 217 aa19.2■□□□□ 0.66
TPM3-220ENST00000509601 CSH2P0DML3 217 aa19.2■□□□□ 0.66
TPM3-220ENST00000509601 MLLT6P55198 1093 aaPredicted RBP19.2■□□□□ 0.66
TPM3-220ENST00000509601 MYL6P60660 151 aa19.2■□□□□ 0.66
TPM3-220ENST00000509601 RPL10AP62906 217 aaKnown RBP19.2■□□□□ 0.66
TPM3-220ENST00000509601 DPYDQ12882 1025 aa19.2■□□□□ 0.66
TPM3-220ENST00000509601 KRBA2Q6ZNG9 492 aa19.2■□□□□ 0.66
TPM3-220ENST00000509601 SPATA2LQ8IUW3 424 aaPredicted RBP19.2■□□□□ 0.66
TPM3-220ENST00000509601 FUBP3Q96I24 572 aaKnown RBP eCLIP19.2■□□□□ 0.66
TPM3-220ENST00000509601 MYRFLQ96LU7 910 aa19.2■□□□□ 0.66
TPM3-220ENST00000509601 MMS19Q96T76 1030 aa19.2■□□□□ 0.66
TPM3-220ENST00000509601 SYT15Q9BQS2 421 aa19.2■□□□□ 0.66
TPM3-220ENST00000509601 SMG9Q9H0W8 520 aaKnown RBP19.2■□□□□ 0.66
TPM3-220ENST00000509601 XYLT2Q9H1B5 865 aa19.2■□□□□ 0.66
TPM3-220ENST00000509601 GDPD2Q9HCC8 539 aa19.2■□□□□ 0.66
TPM3-220ENST00000509601 ATP6V1DQ9Y5K8 247 aa19.2■□□□□ 0.66
TPM3-220ENST00000509601 COL4A2P08572 1712 aa19.2■□□□□ 0.66
TPM3-220ENST00000509601 SLC38A8A6NNN8 435 aa19.19■□□□□ 0.66
TPM3-220ENST00000509601 LRRIQ3A6PVS8 624 aaPredicted RBP19.19■□□□□ 0.66
TPM3-220ENST00000509601 DPYSL4O14531 572 aa19.19■□□□□ 0.66
TPM3-220ENST00000509601 GNL1P36915 607 aaPredicted RBP19.19■□□□□ 0.66
TPM3-220ENST00000509601 MAGEA11P43364 429 aa19.19■□□□□ 0.66
TPM3-220ENST00000509601 RPS9P46781 194 aaKnown RBP19.19■□□□□ 0.66
TPM3-220ENST00000509601 PSMC1P62191 440 aaKnown RBP19.19■□□□□ 0.66
TPM3-220ENST00000509601 WDR72Q3MJ13 1102 aa19.19■□□□□ 0.66
TPM3-220ENST00000509601 TXNDC8Q6A555 127 aa19.19■□□□□ 0.66
TPM3-220ENST00000509601 YAF2Q8IY57 180 aa19.19■□□□□ 0.66
TPM3-220ENST00000509601 CMTM8Q8IZV2 173 aa19.19■□□□□ 0.66
TPM3-220ENST00000509601 FSIP1Q8NA03 581 aa19.19■□□□□ 0.66
TPM3-220ENST00000509601 FAM3CQ92520 227 aa19.19■□□□□ 0.66
TPM3-220ENST00000509601 ZFYVE19Q96K21 471 aa19.19■□□□□ 0.66
TPM3-220ENST00000509601 MAGEC2Q9UBF1 373 aaPredicted RBP19.19■□□□□ 0.66
TPM3-220ENST00000509601 MAGED2Q9UNF1 606 aaPredicted RBP19.19■□□□□ 0.66
TPM3-220ENST00000509601 MRPS17Q9Y2R5 130 aaKnown RBP19.19■□□□□ 0.66
TPM3-220ENST00000509601 PIAS3Q9Y6X2 628 aa19.19■□□□□ 0.66
TPM3-220ENST00000509601 DENND4CQ5VZ89 1909 aa19.19■□□□□ 0.66
TPM3-220ENST00000509601 CFAP54Q96N23 3096 aa19.19■□□□□ 0.66
TPM3-220ENST00000509601 SOBPA7XYQ1 873 aa19.18■□□□□ 0.66
TPM3-220ENST00000509601 NCAM2O15394 837 aa19.18■□□□□ 0.66
TPM3-220ENST00000509601 RHOBTB3O94955 611 aa19.18■□□□□ 0.66
TPM3-220ENST00000509601 ZNF202O95125 648 aa19.18■□□□□ 0.66
TPM3-220ENST00000509601 ATICP31939 592 aa19.18■□□□□ 0.66
TPM3-220ENST00000509601 MAGEA9P43362 315 aa19.18■□□□□ 0.66
TPM3-220ENST00000509601 DLG4P78352 724 aa19.18■□□□□ 0.66
TPM3-220ENST00000509601 TDRD10Q5VZ19 366 aaKnown RBP19.18■□□□□ 0.66
TPM3-220ENST00000509601 MON1AQ86VX9 555 aa19.18■□□□□ 0.66
TPM3-220ENST00000509601 MAB21L3Q8N8X9 362 aa19.18■□□□□ 0.66
TPM3-220ENST00000509601 MYCBPAPQ8TBZ2 947 aa19.18■□□□□ 0.66
TPM3-220ENST00000509601 BPIFB1Q8TDL5 484 aa19.18■□□□□ 0.66
TPM3-220ENST00000509601 NKD2Q969F2 451 aaPredicted RBP19.18■□□□□ 0.66
TPM3-220ENST00000509601 MYLPFQ96A32 169 aa19.18■□□□□ 0.66
TPM3-220ENST00000509601 TRMT2BQ96GJ1 504 aaKnown RBP19.18■□□□□ 0.66
TPM3-220ENST00000509601 GCNAQ96QF7 691 aa19.18■□□□□ 0.66
TPM3-220ENST00000509601 SPATA6Q9NWH7 488 aaPredicted RBP19.18■□□□□ 0.66
TPM3-220ENST00000509601 ZMYM5Q9UJ78 669 aa19.18■□□□□ 0.66
TPM3-220ENST00000509601 NDRG2Q9UN36 371 aaKnown RBP19.18■□□□□ 0.66
TPM3-220ENST00000509601 TRAF3IP3Q9Y228 551 aa19.18■□□□□ 0.66
TPM3-220ENST00000509601 CCL26Q9Y258 94 aa19.18■□□□□ 0.66
TPM3-220ENST00000509601 R4GN57 208 aa19.18■□□□□ 0.66
TPM3-220ENST00000509601 WDR87Q6ZQQ6 2873 aa19.18■□□□□ 0.66
TPM3-220ENST00000509601 TICRRQ7Z2Z1 1910 aa19.17■□□□□ 0.66
TPM3-220ENST00000509601 TADA3O75528 432 aa19.17■□□□□ 0.66
TPM3-220ENST00000509601 VNN1O95497 513 aa19.17■□□□□ 0.66
TPM3-220ENST00000509601 NR3C1P04150 777 aa19.17■□□□□ 0.66
TPM3-220ENST00000509601 BDNFP23560 247 aa19.17■□□□□ 0.66
TPM3-220ENST00000509601 CCNE1P24864 410 aa19.17■□□□□ 0.66
TPM3-220ENST00000509601 SOX9P48436 509 aa19.17■□□□□ 0.66
TPM3-220ENST00000509601 TRPC3Q13507 836 aa19.17■□□□□ 0.66
TPM3-220ENST00000509601 ARHGAP29Q52LW3 1261 aa19.17■□□□□ 0.66
TPM3-220ENST00000509601 C4orf50Q6ZRC1 276 aa19.17■□□□□ 0.66
TPM3-220ENST00000509601 SCN4BQ8IWT1 228 aa19.17■□□□□ 0.66
TPM3-220ENST00000509601 CELF5Q8N6W0 485 aaKnown RBP19.17■□□□□ 0.66
TPM3-220ENST00000509601 CSGALNACT1Q8TDX6 532 aa19.17■□□□□ 0.66
TPM3-220ENST00000509601 USP13Q92995 863 aaPredicted RBP19.17■□□□□ 0.66
TPM3-220ENST00000509601 PCED1BQ96HM7 432 aa19.17■□□□□ 0.66
TPM3-220ENST00000509601 VRTNQ9H8Y1 702 aa19.17■□□□□ 0.66
TPM3-220ENST00000509601 LMAN1LQ9HAT1 526 aa19.17■□□□□ 0.66
TPM3-220ENST00000509601 GTSE1Q9NYZ3 720 aa19.17■□□□□ 0.66
TPM3-220ENST00000509601 NUP210Q8TEM1 1887 aaPredicted RBP19.16■□□□□ 0.66
TPM3-220ENST00000509601 CHRNB1P11230 501 aa19.16■□□□□ 0.66
TPM3-220ENST00000509601 PTPN1P18031 435 aaKnown RBP19.16■□□□□ 0.66
TPM3-220ENST00000509601 DDX6P26196 483 aaKnown RBP eCLIP19.16■□□□□ 0.66
TPM3-220ENST00000509601 AP3M2P53677 418 aa19.16■□□□□ 0.66
TPM3-220ENST00000509601 WDR44Q5JSH3 913 aa19.16■□□□□ 0.66
TPM3-220ENST00000509601 C1orf220Q5T0J3 134 aa19.16■□□□□ 0.66
TPM3-220ENST00000509601 VSTM1Q6UX27 236 aa19.16■□□□□ 0.66
TPM3-220ENST00000509601 MAMSTRQ6ZN01 415 aa19.16■□□□□ 0.66
TPM3-220ENST00000509601 OR6B3Q8NGW1 331 aa19.16■□□□□ 0.66
TPM3-220ENST00000509601 TTC8Q8TAM2 541 aa19.16■□□□□ 0.66
TPM3-220ENST00000509601 RIN3Q8TB24 985 aa19.16■□□□□ 0.66
TPM3-220ENST00000509601 ELMO3Q96BJ8 720 aa19.16■□□□□ 0.66
TPM3-220ENST00000509601 SPATA17Q96L03 361 aa19.16■□□□□ 0.66
TPM3-220ENST00000509601 FAM83CQ9BQN1 747 aa19.16■□□□□ 0.66
TPM3-220ENST00000509601 SNX25Q9H3E2 840 aa19.16■□□□□ 0.66
TPM3-220ENST00000509601 DPEP3Q9H4B8 488 aa19.16■□□□□ 0.66
TPM3-220ENST00000509601 C8orf33Q9H7E9 229 aaPredicted RBP19.16■□□□□ 0.66
TPM3-220ENST00000509601 NXF1Q9UBU9 619 aaKnown RBP19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms