RNA–Protein interactions for RNA: ENST00000498280.1

RBM39-242, Transcript of RNA binding motif protein 39, human

TSL 3

Gene RBM39, Length 444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-242	ENST00000498280	IGKV2D-30	A0A075B6S6	120 aa		3.13	□□□□□ -1.91
RBM39-242	ENST00000498280	PRPF3	O43395	683 aa	Known RBP	3.13	□□□□□ -1.91
RBM39-242	ENST00000498280	IL33	O95760	270 aa		3.13	□□□□□ -1.91
RBM39-242	ENST00000498280	GJB1	P08034	283 aa		3.13	□□□□□ -1.91
RBM39-242	ENST00000498280	PF4V1	P10720	104 aa		3.13	□□□□□ -1.91
RBM39-242	ENST00000498280	KRTAP5-9	P26371	169 aa		3.13	□□□□□ -1.91
RBM39-242	ENST00000498280	NR4A2	P43354	598 aa		3.13	□□□□□ -1.91
RBM39-242	ENST00000498280	CYP4F2	P78329	520 aa		3.13	□□□□□ -1.91
RBM39-242	ENST00000498280	KIF23	Q02241	960 aa	Predicted RBP	3.13	□□□□□ -1.91
RBM39-242	ENST00000498280	BMPR2	Q13873	1038 aa		3.13	□□□□□ -1.91
RBM39-242	ENST00000498280	RABEP1	Q15276	862 aa		3.13	□□□□□ -1.91
RBM39-242	ENST00000498280	TMEM240	Q5SV17	173 aa		3.13	□□□□□ -1.91
RBM39-242	ENST00000498280	NAPRT	Q6XQN6	538 aa		3.13	□□□□□ -1.91
RBM39-242	ENST00000498280	ZNF551	Q7Z340	670 aa	Predicted RBP	3.13	□□□□□ -1.91
RBM39-242	ENST00000498280	CHSY1	Q86X52	802 aa		3.13	□□□□□ -1.91
RBM39-242	ENST00000498280	ZDHHC17	Q8IUH5	632 aa		3.13	□□□□□ -1.91
RBM39-242	ENST00000498280	TPH2	Q8IWU9	490 aa		3.13	□□□□□ -1.91
RBM39-242	ENST00000498280	CHPF	Q8IZ52	775 aa		3.13	□□□□□ -1.91
RBM39-242	ENST00000498280	SCAMP4	Q969E2	229 aa		3.13	□□□□□ -1.91
RBM39-242	ENST00000498280	COA7	Q96BR5	231 aa		3.13	□□□□□ -1.91
RBM39-242	ENST00000498280	FAM136A	Q96C01	138 aa		3.13	□□□□□ -1.91
RBM39-242	ENST00000498280	OSBPL9	Q96SU4	736 aa		3.13	□□□□□ -1.91
RBM39-242	ENST00000498280	ALG8	Q9BVK2	526 aa		3.13	□□□□□ -1.91
RBM39-242	ENST00000498280	KRTAP4-4	Q9BYR3	166 aa		3.13	□□□□□ -1.91
RBM39-242	ENST00000498280	NOTCH4	Q99466	2003 aa		3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	E2F8	A0AVK6	867 aa		3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	MYMK	A6NI61	221 aa		3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	ADAMTS3	O15072	1205 aa		3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	TRIAP1	O43715	76 aa		3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	SGTA	O43765	313 aa		3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	JTB	O76095	146 aa		3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	CT47B1	P0C2W7	299 aa	Predicted RBP	3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	NDUFB7	P17568	137 aa		3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	CYP2C18	P33260	490 aa		3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	ZNF134	P52741	427 aa		3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	LINC00205	P59089	165 aa		3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	RAB39A	Q14964	217 aa		3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	KRTAP5-4	Q6L8H1	288 aa		3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	KIAA1161	Q6NSJ0	714 aa		3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	CEP85	Q6P2H3	762 aa		3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	SLC4A10	Q6U841	1118 aa		3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	WDR75	Q8IWA0	830 aa	Known RBP	3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	FANCB	Q8NB91	859 aa		3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	NSUN6	Q8TEA1	469 aa	Known RBP	3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	HSPBAP1	Q96EW2	488 aa		3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	C5orf34	Q96MH7	638 aa		3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	VPS16	Q9H269	839 aa		3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	EBF3	Q9H4W6	596 aa		3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	BRD9	Q9H8M2	597 aa		3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	TCF7L1	Q9HCS4	588 aa		3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	TUBA8	Q9NY65	449 aa	Predicted RBP	3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	SAP30BP	Q9UHR5	308 aa	Known RBP	3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	ZNF112	Q9UJU3	913 aa		3.12	□□□□□ -1.91
RBM39-242	ENST00000498280	RFPL1	O75677	317 aa		3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	DNAJB5	O75953	348 aa		3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	TUBB4A	P04350	444 aa		3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	IL6R	P08887	468 aa	Predicted RBP	3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	ENG	P17813	658 aa		3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	CD6	P30203	668 aa		3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	CCKAR	P32238	428 aa		3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	FXR1	P51114	621 aa	Known RBP eCLIP	3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	DAZAP2	Q15038	168 aa	Predicted RBP	3.11	□□□□□ -1.91
RBM39-242	ENST00000498280		Q4G0T1	1027 aa		3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	TREML2	Q5T2D2	321 aa		3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	FAM102B	Q5T8I3	360 aa		3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	PXDC1	Q5TGL8	231 aa		3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	CATSPERG	Q6ZRH7	1159 aa		3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	SLC29A4	Q7RTT9	530 aa		3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	PPP1R32	Q7Z5V6	425 aa		3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	CATIP	Q7Z7H3	387 aa		3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	C14orf80	Q86SX3	495 aa		3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	KRT73	Q86Y46	540 aa		3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	PDSS2	Q86YH6	399 aa		3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	MYO1H	Q8N1T3	1032 aa		3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	PNLDC1	Q8NA58	520 aa	Known RBP	3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	ZC3H10	Q96K80	434 aa	Known RBP	3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	LRGUK	Q96M69	825 aa		3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	PRSS22	Q9GZN4	317 aa		3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	GPR35	Q9HC97	309 aa		3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	CALCOCO1	Q9P1Z2	691 aa		3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	SSX2IP	Q9Y2D8	614 aa		3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	ANKRD6	Q9Y2G4	727 aa		3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	PCDHA3	Q9Y5H8	950 aa		3.11	□□□□□ -1.91
RBM39-242	ENST00000498280	CCDC187	A0A096LP49	1063 aa		3.1	□□□□□ -1.91
RBM39-242	ENST00000498280	MYO1F	O00160	1098 aa		3.1	□□□□□ -1.91
RBM39-242	ENST00000498280	DCLK1	O15075	740 aa		3.1	□□□□□ -1.91
RBM39-242	ENST00000498280	PDE8B	O95263	885 aa		3.1	□□□□□ -1.91
RBM39-242	ENST00000498280	ANXA1	P04083	346 aa		3.1	□□□□□ -1.91
RBM39-242	ENST00000498280	ITGAL	P20701	1170 aa		3.1	□□□□□ -1.91
RBM39-242	ENST00000498280	PRDX5	P30044	214 aa		3.1	□□□□□ -1.91
RBM39-242	ENST00000498280	GCLC	P48506	637 aa	Predicted RBP	3.1	□□□□□ -1.91
RBM39-242	ENST00000498280	ADK	P55263	362 aa	Known RBP	3.1	□□□□□ -1.91
RBM39-242	ENST00000498280	EEFSEC	P57772	596 aa	Known RBP	3.1	□□□□□ -1.91
RBM39-242	ENST00000498280	MLC1	Q15049	377 aa		3.1	□□□□□ -1.91
RBM39-242	ENST00000498280	UAP1L1	Q3KQV9	507 aa		3.1	□□□□□ -1.91
RBM39-242	ENST00000498280	PLAC9	Q5JTB6	97 aa		3.1	□□□□□ -1.91
RBM39-242	ENST00000498280	PCID2	Q5JVF3	399 aa		3.1	□□□□□ -1.91
RBM39-242	ENST00000498280	FCRL6	Q6DN72	434 aa		3.1	□□□□□ -1.91
RBM39-242	ENST00000498280	TMEM108	Q6UXF1	575 aa		3.1	□□□□□ -1.91
RBM39-242	ENST00000498280	USP37	Q86T82	979 aa		3.1	□□□□□ -1.91

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms