RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 C21orf62-AS1Q17RA5 79 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 NRN1LQ496H8 165 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 CNNM4Q6P4Q7 775 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 CRIP3Q6Q6R5 217 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 LMBR1LQ6UX01 489 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 C16orf86Q6ZW13 317 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 PASD1Q8IV76 773 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 TSPYL6Q8N831 410 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 SHCBP1Q8NEM2 672 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 OR5AN1Q8NGI8 311 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 PHOSPHO2Q8TCD6 241 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 RUBCNQ92622 972 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 LPPQ93052 612 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 GFM2Q969S9 779 aaKnown RBP4.72□□□□□ -1.65
USP54-217ENST00000498213 FOXRED1Q96CU9 486 aaPredicted RBP4.72□□□□□ -1.65
USP54-217ENST00000498213 MRPL38Q96DV4 380 aaKnown RBP4.72□□□□□ -1.65
USP54-217ENST00000498213 WWC2-AS2Q96NR7 200 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 TGS1Q96RS0 853 aaKnown RBP4.72□□□□□ -1.65
USP54-217ENST00000498213 C17orf80Q9BSJ5 609 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 FTOQ9C0B1 505 aaKnown RBP eCLIP4.72□□□□□ -1.65
USP54-217ENST00000498213 NELFAQ9H3P2 528 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 FANCLQ9NW38 375 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 MAGEL2Q9UJ55 1249 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 DENND2AQ9ULE3 1009 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 SYNPO2Q9UMS6 1093 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 VWA7Q9Y334 891 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 RABGAP1Q9Y3P9 1069 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 TESMINQ9Y4I5 508 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 SLC30A1Q9Y6M5 507 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 OTOGLQ3ZCN5 2332 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 ELP1O95163 1332 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 FANCIQ9NVI1 1328 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 SYNRGQ9UMZ2 1314 aa4.72□□□□□ -1.65
USP54-217ENST00000498213 ZNF462Q96JM2 2506 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 SPEGQ15772 3267 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 A0A1W2PRX2 142 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 LINC01553A4QN01 128 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 LOC730098B7Z3J9 87 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 ELL2O00472 640 aaPredicted RBP4.71□□□□□ -1.66
USP54-217ENST00000498213 CDC45O75419 566 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 MAFO75444 373 aaPredicted RBP4.71□□□□□ -1.66
USP54-217ENST00000498213 CSPG5O95196 566 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 ASGR1P07306 291 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 ACTN1P12814 892 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 SLC9A1P19634 815 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 FGFR2P21802 821 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 PTX3P26022 381 aaPredicted RBP4.71□□□□□ -1.66
USP54-217ENST00000498213 MSX2P35548 267 aaPredicted RBP4.71□□□□□ -1.66
USP54-217ENST00000498213 BACE1P56817 501 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 ERVK-21P61565 698 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 ADCY1Q08828 1119 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 PICALMQ13492 652 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 GRM7Q14831 915 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 EPHA7Q15375 998 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 ANGPT1Q15389 498 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 ALDH1L2Q3SY69 923 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 CCSAPQ6IQ19 270 aaPredicted RBP4.71□□□□□ -1.66
USP54-217ENST00000498213 PHYKPLQ8IUZ5 450 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 ZZZ3Q8IYH5 903 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 VGLL2Q8N8G2 317 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 KLHDC9Q8NEP7 349 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 TMEM176AQ96HP8 235 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 OSBPL5Q9H0X9 879 aaPredicted RBP4.71□□□□□ -1.66
USP54-217ENST00000498213 DHX36Q9H2U1 1008 aaKnown RBP4.71□□□□□ -1.66
USP54-217ENST00000498213 KCMF1Q9P0J7 381 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 HERC5Q9UII4 1024 aaKnown RBP4.71□□□□□ -1.66
USP54-217ENST00000498213 ANGPTL2Q9UKU9 493 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 RBM8AQ9Y5S9 174 aaKnown RBP4.71□□□□□ -1.66
USP54-217ENST00000498213 MYO18BQ8IUG5 2567 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 ZZEF1O43149 2961 aa4.71□□□□□ -1.66
USP54-217ENST00000498213 IGF2RP11717 2491 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 PTPN13Q12923 2485 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 PHIPQ8WWQ0 1821 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 SPEF2Q9C093 1822 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 C19orf81C9J6K1 198 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 EYA2O00167 538 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 MATN2O00339 956 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 DVL2O14641 736 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 LINC01565O15544 149 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 PI15O43692 258 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 FZD7O75084 574 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 AMHP03971 560 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 PROS1P07225 676 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 LDHCP07864 332 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 CYP2C9P11712 490 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 IL15P40933 162 aaPredicted RBP4.7□□□□□ -1.66
USP54-217ENST00000498213 BCAR1P56945 870 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 GSTO1P78417 241 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 DDX10Q13206 875 aaKnown RBP4.7□□□□□ -1.66
USP54-217ENST00000498213 PTPN21Q16825 1174 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 PTPROQ16827 1216 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 SOWAHCQ53LP3 525 aaPredicted RBP4.7□□□□□ -1.66
USP54-217ENST00000498213 METTL24Q5JXM2 366 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 ATF7IPQ6VMQ6 1270 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 SGMS1Q86VZ5 419 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 D2HGDHQ8N465 521 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 CFHR4Q92496 578 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 SLC7A6OSQ96CW6 309 aaPredicted RBP4.7□□□□□ -1.66
USP54-217ENST00000498213 DYDC2Q96IM9 177 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 ELF4Q99607 663 aaPredicted RBP4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms