RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 TMEFF1Q8IYR6 380 aa17.81■□□□□ 0.44
VIM-208ENST00000497849 C4orf32Q8N8J7 132 aa17.81■□□□□ 0.44
VIM-208ENST00000497849 SPIRE2Q8WWL2 714 aa17.81■□□□□ 0.44
VIM-208ENST00000497849 MRPS31Q92665 395 aaKnown RBP17.81■□□□□ 0.44
VIM-208ENST00000497849 BBC3Q96PG8 261 aaPredicted RBP17.81■□□□□ 0.44
VIM-208ENST00000497849 SLC22A12Q96S37 553 aa17.81■□□□□ 0.44
VIM-208ENST00000497849 FSCN3Q9NQT6 498 aa17.81■□□□□ 0.44
VIM-208ENST00000497849 ABI2Q9NYB9 513 aaPredicted RBP17.81■□□□□ 0.44
VIM-208ENST00000497849 MMP17Q9ULZ9 603 aa17.81■□□□□ 0.44
VIM-208ENST00000497849 PCDH15Q96QU1 1955 aa17.8■□□□□ 0.44
VIM-208ENST00000497849 ATXN2Q99700 1313 aaKnown RBP17.8■□□□□ 0.44
VIM-208ENST00000497849 APC2O95996 2303 aa17.8■□□□□ 0.44
VIM-208ENST00000497849 PIRO00625 290 aa17.8■□□□□ 0.44
VIM-208ENST00000497849 OPRD1P41143 372 aa17.8■□□□□ 0.44
VIM-208ENST00000497849 MATR3P43243 847 aaKnown RBP eCLIP17.8■□□□□ 0.44
VIM-208ENST00000497849 SCAPQ12770 1279 aa17.8■□□□□ 0.44
VIM-208ENST00000497849 USP4Q13107 963 aa17.8■□□□□ 0.44
VIM-208ENST00000497849 ORC2Q13416 577 aaPredicted RBP17.8■□□□□ 0.44
VIM-208ENST00000497849 TRIM29Q14134 588 aa17.8■□□□□ 0.44
VIM-208ENST00000497849 ME3Q16798 604 aa17.8■□□□□ 0.44
VIM-208ENST00000497849 LPCAT2Q7L5N7 544 aa17.8■□□□□ 0.44
VIM-208ENST00000497849 KCNK18Q7Z418 384 aa17.8■□□□□ 0.44
VIM-208ENST00000497849 CCDC33Q8N5R6 958 aa17.8■□□□□ 0.44
VIM-208ENST00000497849 CCDC26Q8TAB7 109 aa17.8■□□□□ 0.44
VIM-208ENST00000497849 SNX29Q8TEQ0 813 aa17.8■□□□□ 0.44
VIM-208ENST00000497849 ATP2A3Q93084 1043 aa17.8■□□□□ 0.44
VIM-208ENST00000497849 GTF3C6Q969F1 213 aa17.8■□□□□ 0.44
VIM-208ENST00000497849 CYP2S1Q96SQ9 504 aa17.8■□□□□ 0.44
VIM-208ENST00000497849 MAGED2Q9UNF1 606 aaPredicted RBP17.8■□□□□ 0.44
VIM-208ENST00000497849 DNM3Q9UQ16 869 aa17.8■□□□□ 0.44
VIM-208ENST00000497849 BPTFQ12830 3046 aa17.8■□□□□ 0.44
VIM-208ENST00000497849 PAX3P23760 479 aa17.79■□□□□ 0.44
VIM-208ENST00000497849 IFNAR2P48551 515 aa17.79■□□□□ 0.44
VIM-208ENST00000497849 SMARCB1Q12824 385 aa17.79■□□□□ 0.44
VIM-208ENST00000497849 SDHAF4Q5VUM1 108 aa17.79■□□□□ 0.44
VIM-208ENST00000497849 PEAR1Q5VY43 1037 aaPredicted RBP17.79■□□□□ 0.44
VIM-208ENST00000497849 JADE1Q6IE81 842 aa17.79■□□□□ 0.44
VIM-208ENST00000497849 TTC30AQ86WT1 665 aa17.79■□□□□ 0.44
VIM-208ENST00000497849 EFCAB13Q8IY85 973 aa17.79■□□□□ 0.44
VIM-208ENST00000497849 TTC16Q8NEE8 873 aa17.79■□□□□ 0.44
VIM-208ENST00000497849 LINC00597Q9H2U6 94 aa17.79■□□□□ 0.44
VIM-208ENST00000497849 TMLHEQ9NVH6 421 aa17.79■□□□□ 0.44
VIM-208ENST00000497849 PILRBQ9UKJ0 227 aa17.79■□□□□ 0.44
VIM-208ENST00000497849 HELZP42694 1942 aaKnown RBP17.78■□□□□ 0.44
VIM-208ENST00000497849 ANO9A1A5B4 782 aa17.78■□□□□ 0.44
VIM-208ENST00000497849 PP2D1A8MPX8 630 aa17.78■□□□□ 0.44
VIM-208ENST00000497849 CHRM1P11229 460 aaPredicted RBP17.78■□□□□ 0.44
VIM-208ENST00000497849 PLS3P13797 630 aa17.78■□□□□ 0.44
VIM-208ENST00000497849 GUCY2CP25092 1073 aa17.78■□□□□ 0.44
VIM-208ENST00000497849 RDXP35241 583 aaKnown RBP17.78■□□□□ 0.44
VIM-208ENST00000497849 GUCY1B3Q02153 619 aa17.78■□□□□ 0.44
VIM-208ENST00000497849 RAD51AP2Q09MP3 1159 aa17.78■□□□□ 0.44
VIM-208ENST00000497849 PDIA5Q14554 519 aa17.78■□□□□ 0.44
VIM-208ENST00000497849 GAB4Q2WGN9 574 aa17.78■□□□□ 0.44
VIM-208ENST00000497849 IGSF22Q8N9C0 903 aa17.78■□□□□ 0.44
VIM-208ENST00000497849 TSPAN18Q96SJ8 248 aa17.78■□□□□ 0.44
VIM-208ENST00000497849 DSEQ9UL01 958 aa17.78■□□□□ 0.44
VIM-208ENST00000497849 CYB561D2O14569 222 aa17.77■□□□□ 0.44
VIM-208ENST00000497849 NFICP08651 508 aa17.77■□□□□ 0.44
VIM-208ENST00000497849 CSH1P0DML2 217 aa17.77■□□□□ 0.44
VIM-208ENST00000497849 CSH2P0DML3 217 aa17.77■□□□□ 0.44
VIM-208ENST00000497849 ITPKAP23677 461 aa17.77■□□□□ 0.44
VIM-208ENST00000497849 ZNF423Q2M1K9 1284 aa17.77■□□□□ 0.44
VIM-208ENST00000497849 MAP7D1Q3KQU3 841 aa17.77■□□□□ 0.44
VIM-208ENST00000497849 ZC2HC1CQ53FD0 456 aaPredicted RBP17.77■□□□□ 0.44
VIM-208ENST00000497849 TTC38Q5R3I4 469 aa17.77■□□□□ 0.44
VIM-208ENST00000497849 LYSMD4Q5XG99 296 aa17.77■□□□□ 0.44
VIM-208ENST00000497849 WSCD1Q658N2 575 aa17.77■□□□□ 0.44
VIM-208ENST00000497849 METTL23Q86XA0 190 aa17.77■□□□□ 0.44
VIM-208ENST00000497849 THEM5Q8N1Q8 247 aa17.77■□□□□ 0.44
VIM-208ENST00000497849 HDDC3Q8N4P3 179 aa17.77■□□□□ 0.44
VIM-208ENST00000497849 PI4K2AQ9BTU6 479 aa17.77■□□□□ 0.44
VIM-208ENST00000497849 GTPBP2Q9BX10 602 aaKnown RBP17.77■□□□□ 0.44
VIM-208ENST00000497849 TMEM206Q9H813 350 aa17.77■□□□□ 0.44
VIM-208ENST00000497849 RPF1Q9H9Y2 349 aaKnown RBP17.77■□□□□ 0.44
VIM-208ENST00000497849 TRPC7Q9HCX4 862 aa17.77■□□□□ 0.44
VIM-208ENST00000497849 PCDHB5Q9Y5E4 795 aa17.77■□□□□ 0.44
VIM-208ENST00000497849 MAP3K13O43283 966 aa17.76■□□□□ 0.43
VIM-208ENST00000497849 ALDH1A2O94788 518 aa17.76■□□□□ 0.43
VIM-208ENST00000497849 CFIP05156 583 aa17.76■□□□□ 0.43
VIM-208ENST00000497849 USP17L7P0C7H9 530 aa17.76■□□□□ 0.43
VIM-208ENST00000497849 CD59P13987 128 aa17.76■□□□□ 0.43
VIM-208ENST00000497849 CDC25AP30304 524 aa17.76■□□□□ 0.43
VIM-208ENST00000497849 SMTNP53814 917 aa17.76■□□□□ 0.43
VIM-208ENST00000497849 NR1H3Q13133 447 aa17.76■□□□□ 0.43
VIM-208ENST00000497849 NBR1Q14596 966 aa17.76■□□□□ 0.43
VIM-208ENST00000497849 SAFBQ15424 915 aaKnown RBP eCLIP17.76■□□□□ 0.43
VIM-208ENST00000497849 SPDYCQ5MJ68 293 aa17.76■□□□□ 0.43
VIM-208ENST00000497849 SFTPA1Q8IWL2 248 aa17.76■□□□□ 0.43
VIM-208ENST00000497849 ALLCQ8N6M5 410 aa17.76■□□□□ 0.43
VIM-208ENST00000497849 WHAMMQ8TF30 809 aa17.76■□□□□ 0.43
VIM-208ENST00000497849 FAM212AQ96EL1 285 aa17.76■□□□□ 0.43
VIM-208ENST00000497849 SPACA7Q96KW9 195 aa17.76■□□□□ 0.43
VIM-208ENST00000497849 MYRFLQ96LU7 910 aa17.76■□□□□ 0.43
VIM-208ENST00000497849 PYM1Q9BRP8 204 aaKnown RBP17.76■□□□□ 0.43
VIM-208ENST00000497849 TIPINQ9BVW5 301 aa17.76■□□□□ 0.43
VIM-208ENST00000497849 CAPN10Q9HC96 672 aa17.76■□□□□ 0.43
VIM-208ENST00000497849 GCNT4Q9P109 453 aa17.76■□□□□ 0.43
VIM-208ENST00000497849 CIZ1Q9ULV3 898 aaPredicted RBP17.76■□□□□ 0.43
VIM-208ENST00000497849 SLC6A14Q9UN76 642 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms