RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 TRIM8Q9BZR9 551 aa7.56□□□□□ -1.2
VIM-207ENST00000495528 NRBP1Q9UHY1 535 aa7.56□□□□□ -1.2
VIM-207ENST00000495528 DNAI1Q9UI46 699 aa7.56□□□□□ -1.2
VIM-207ENST00000495528 EDARQ9UNE0 448 aa7.56□□□□□ -1.2
VIM-207ENST00000495528 INVSQ9Y283 1065 aa7.56□□□□□ -1.2
VIM-207ENST00000495528 FRMPD3Q5JV73 1810 aa7.55□□□□□ -1.2
VIM-207ENST00000495528 RLFQ13129 1914 aa7.55□□□□□ -1.2
VIM-207ENST00000495528 VWA5AO00534 786 aa7.55□□□□□ -1.2
VIM-207ENST00000495528 WDR46O15213 610 aaKnown RBP7.55□□□□□ -1.2
VIM-207ENST00000495528 OPHN1O60890 802 aa7.55□□□□□ -1.2
VIM-207ENST00000495528 MBD4O95243 580 aa7.55□□□□□ -1.2
VIM-207ENST00000495528 ADD2P35612 726 aa7.55□□□□□ -1.2
VIM-207ENST00000495528 MRE11P49959 708 aa7.55□□□□□ -1.2
VIM-207ENST00000495528 ANAPC15P60006 121 aa7.55□□□□□ -1.2
VIM-207ENST00000495528 ITKQ08881 620 aa7.55□□□□□ -1.2
VIM-207ENST00000495528 ADAM15Q13444 863 aa7.55□□□□□ -1.2
VIM-207ENST00000495528 KCTD2Q14681 263 aa7.55□□□□□ -1.2
VIM-207ENST00000495528 PCOLCEQ15113 449 aa7.55□□□□□ -1.2
VIM-207ENST00000495528 C12orf60Q5U649 245 aa7.55□□□□□ -1.2
VIM-207ENST00000495528 CLASRPQ8N2M8 674 aaKnown RBP7.55□□□□□ -1.2
VIM-207ENST00000495528 REPS2Q8NFH8 660 aa7.55□□□□□ -1.2
VIM-207ENST00000495528 CCDC17Q96LX7 622 aa7.55□□□□□ -1.2
VIM-207ENST00000495528 BOLA2Q9H3K6 86 aa7.55□□□□□ -1.2
VIM-207ENST00000495528 PRDM12Q9H4Q4 367 aa7.55□□□□□ -1.2
VIM-207ENST00000495528 SH2D4AQ9H788 454 aa7.55□□□□□ -1.2
VIM-207ENST00000495528 DNAH12Q6ZR08 3092 aa7.55□□□□□ -1.2
VIM-207ENST00000495528 VCANP13611 3396 aa7.54□□□□□ -1.2
VIM-207ENST00000495528 A0A0A6YYJ9 748 aa7.54□□□□□ -1.2
VIM-207ENST00000495528 HSFX4A0A1B0GTS1 333 aaPredicted RBP7.54□□□□□ -1.2
VIM-207ENST00000495528 HSFX3A0A1B0GWH4 333 aaPredicted RBP7.54□□□□□ -1.2
VIM-207ENST00000495528 MAFGO15525 162 aa7.54□□□□□ -1.2
VIM-207ENST00000495528 HMMRO75330 724 aa7.54□□□□□ -1.2
VIM-207ENST00000495528 SNAI1O95863 264 aaPredicted RBP7.54□□□□□ -1.2
VIM-207ENST00000495528 IFIT2P09913 472 aaKnown RBP7.54□□□□□ -1.2
VIM-207ENST00000495528 AKR1A1P14550 325 aa7.54□□□□□ -1.2
VIM-207ENST00000495528 ACLYP53396 1101 aa7.54□□□□□ -1.2
VIM-207ENST00000495528 FPGSQ05932 587 aa7.54□□□□□ -1.2
VIM-207ENST00000495528 HSP90AB4PQ58FF6 505 aa7.54□□□□□ -1.2
VIM-207ENST00000495528 FAM83BQ5T0W9 1011 aa7.54□□□□□ -1.2
VIM-207ENST00000495528 CCSAPQ6IQ19 270 aaPredicted RBP7.54□□□□□ -1.2
VIM-207ENST00000495528 ANKRD33Q7Z3H0 272 aa7.54□□□□□ -1.2
VIM-207ENST00000495528 BMP8AQ7Z5Y6 402 aa7.54□□□□□ -1.2
VIM-207ENST00000495528 LGI4Q8N135 537 aa7.54□□□□□ -1.2
VIM-207ENST00000495528 USP38Q8NB14 1042 aa7.54□□□□□ -1.2
VIM-207ENST00000495528 KLHDC9Q8NEP7 349 aa7.54□□□□□ -1.2
VIM-207ENST00000495528 MTMR8Q96EF0 704 aa7.54□□□□□ -1.2
VIM-207ENST00000495528 PITHD1Q9GZP4 211 aaPredicted RBP7.54□□□□□ -1.2
VIM-207ENST00000495528 STARD7Q9NQZ5 370 aa7.54□□□□□ -1.2
VIM-207ENST00000495528 ATP8A2Q9NTI2 1148 aa7.54□□□□□ -1.2
VIM-207ENST00000495528 POLR3BQ9NW08 1133 aaPredicted RBP7.54□□□□□ -1.2
VIM-207ENST00000495528 SYNPO2Q9UMS6 1093 aa7.54□□□□□ -1.2
VIM-207ENST00000495528 RIPK3Q9Y572 518 aa7.54□□□□□ -1.2
VIM-207ENST00000495528 LTBP2Q14767 1821 aa7.54□□□□□ -1.2
VIM-207ENST00000495528 LAMA2P24043 3122 aaKnown RBP7.54□□□□□ -1.2
VIM-207ENST00000495528 ZNF236Q9UL36 1845 aa7.53□□□□□ -1.2
VIM-207ENST00000495528 SMCHD1A6NHR9 2005 aa7.53□□□□□ -1.2
VIM-207ENST00000495528 MYADML2A6NDP7 307 aa7.53□□□□□ -1.2
VIM-207ENST00000495528 GRXCR1A8MXD5 290 aa7.53□□□□□ -1.2
VIM-207ENST00000495528 MAFO75444 373 aaPredicted RBP7.53□□□□□ -1.2
VIM-207ENST00000495528 TIMP1P01033 207 aa7.53□□□□□ -1.2
VIM-207ENST00000495528 PFKMP08237 780 aa7.53□□□□□ -1.2
VIM-207ENST00000495528 IGBP1P78318 339 aa7.53□□□□□ -1.2
VIM-207ENST00000495528 PPARAQ07869 468 aa7.53□□□□□ -1.2
VIM-207ENST00000495528 FAPQ12884 760 aa7.53□□□□□ -1.2
VIM-207ENST00000495528 HDAC1Q13547 482 aaPredicted RBP7.53□□□□□ -1.2
VIM-207ENST00000495528 UGT8Q16880 541 aa7.53□□□□□ -1.2
VIM-207ENST00000495528 ZNF568Q3ZCX4 644 aa7.53□□□□□ -1.2
VIM-207ENST00000495528 PITRM1Q5JRX3 1037 aa7.53□□□□□ -1.2
VIM-207ENST00000495528 TRIM68Q6AZZ1 485 aa7.53□□□□□ -1.2
VIM-207ENST00000495528 CTR9Q6PD62 1173 aa7.53□□□□□ -1.2
VIM-207ENST00000495528 KIF1BPQ96EK5 621 aa7.53□□□□□ -1.2
VIM-207ENST00000495528 HIST1H2AHQ96KK5 128 aa7.53□□□□□ -1.2
VIM-207ENST00000495528 NUP88Q99567 741 aaPredicted RBP7.53□□□□□ -1.2
VIM-207ENST00000495528 HIST1H2AJQ99878 128 aa7.53□□□□□ -1.2
VIM-207ENST00000495528 BRINP2Q9C0B6 783 aa7.53□□□□□ -1.2
VIM-207ENST00000495528 PUS7LQ9H0K6 701 aaKnown RBP7.53□□□□□ -1.2
VIM-207ENST00000495528 DCTPP1Q9H773 170 aa7.53□□□□□ -1.2
VIM-207ENST00000495528 JADE2Q9NQC1 790 aa7.53□□□□□ -1.2
VIM-207ENST00000495528 PAG1Q9NWQ8 432 aa7.53□□□□□ -1.2
VIM-207ENST00000495528 ZHX1Q9UKY1 873 aaPredicted RBP7.53□□□□□ -1.2
VIM-207ENST00000495528 CNPY2Q9Y2B0 182 aa7.53□□□□□ -1.2
VIM-207ENST00000495528 PCDHB6Q9Y5E3 794 aa7.53□□□□□ -1.2
VIM-207ENST00000495528 SLC4A4Q9Y6R1 1079 aa7.53□□□□□ -1.2
VIM-207ENST00000495528 SYNRGQ9UMZ2 1314 aa7.52□□□□□ -1.2
VIM-207ENST00000495528 ROBO3Q96MS0 1386 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 F5H6K3 240 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 ADCY6O43306 1168 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 DUSP11O75319 330 aaKnown RBP7.52□□□□□ -1.21
VIM-207ENST00000495528 CELA3BP08861 270 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 HNRNPLP14866 589 aaKnown RBP eCLIP7.52□□□□□ -1.21
VIM-207ENST00000495528 ATP5JP18859 108 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 HOXA5P20719 270 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 COPB2P35606 906 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 CDK7P50613 346 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 KLRC3Q07444 240 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 MTMR1Q13613 665 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 TRIM25Q14258 630 aaKnown RBP7.52□□□□□ -1.21
VIM-207ENST00000495528 UBE3CQ15386 1083 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 TBR1Q16650 682 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 ZMAT1Q5H9K5 638 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms