RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 UBA3Q8TBC4 463 aa11.79□□□□□ -0.52
CHMP3-209ENST00000494623 ACTL9Q8TC94 416 aa11.79□□□□□ -0.52
CHMP3-209ENST00000494623 HEXIM2Q96MH2 286 aaKnown RBP11.79□□□□□ -0.52
CHMP3-209ENST00000494623 ADAM33Q9BZ11 813 aa11.79□□□□□ -0.52
CHMP3-209ENST00000494623 FOXP3Q9BZS1 431 aa11.79□□□□□ -0.52
CHMP3-209ENST00000494623 ELOVL4Q9GZR5 314 aa11.79□□□□□ -0.52
CHMP3-209ENST00000494623 LHX5Q9H2C1 402 aa11.79□□□□□ -0.52
CHMP3-209ENST00000494623 EFCC1Q9HA90 598 aa11.79□□□□□ -0.52
CHMP3-209ENST00000494623 IFT122Q9HBG6 1241 aa11.79□□□□□ -0.52
CHMP3-209ENST00000494623 HAUS2Q9NVX0 235 aa11.79□□□□□ -0.52
CHMP3-209ENST00000494623 NKIRAS1Q9NYS0 192 aa11.79□□□□□ -0.52
CHMP3-209ENST00000494623 ERAP1Q9NZ08 941 aa11.79□□□□□ -0.52
CHMP3-209ENST00000494623 LGALS13Q9UHV8 139 aa11.79□□□□□ -0.52
CHMP3-209ENST00000494623 AKT3Q9Y243 479 aa11.79□□□□□ -0.52
CHMP3-209ENST00000494623 LOC285556D6RIA3 1793 aa11.79□□□□□ -0.52
CHMP3-209ENST00000494623 SNX3O60493 162 aa11.79□□□□□ -0.52
CHMP3-209ENST00000494623 SPAG7O75391 227 aa11.79□□□□□ -0.52
CHMP3-209ENST00000494623 ITGAVP06756 1048 aa11.79□□□□□ -0.52
CHMP3-209ENST00000494623 KRT7P08729 469 aa11.79□□□□□ -0.52
CHMP3-209ENST00000494623 SLC26A2P50443 739 aa11.79□□□□□ -0.52
CHMP3-209ENST00000494623 OTUD4Q01804 1114 aaKnown RBP11.79□□□□□ -0.52
CHMP3-209ENST00000494623 SLC25A11Q02978 314 aaKnown RBP11.79□□□□□ -0.52
CHMP3-209ENST00000494623 PDIA2Q13087 525 aaKnown RBP11.79□□□□□ -0.52
CHMP3-209ENST00000494623 TAF5Q15542 800 aa11.79□□□□□ -0.52
CHMP3-209ENST00000494623 FAM133BQ5BKY9 247 aaKnown RBP11.79□□□□□ -0.52
CHMP3-209ENST00000494623 XYLT1Q86Y38 959 aa11.79□□□□□ -0.52
CHMP3-209ENST00000494623 ANKMY2Q8IV38 441 aa11.79□□□□□ -0.52
CHMP3-209ENST00000494623 CKAP2Q8WWK9 683 aa11.79□□□□□ -0.52
CHMP3-209ENST00000494623 HSPH1Q92598 858 aa11.79□□□□□ -0.52
CHMP3-209ENST00000494623 NKD2Q969F2 451 aaPredicted RBP11.79□□□□□ -0.52
CHMP3-209ENST00000494623 BCO2Q9BYV7 579 aa11.79□□□□□ -0.52
CHMP3-209ENST00000494623 PRMT7Q9NVM4 692 aaPredicted RBP11.79□□□□□ -0.52
CHMP3-209ENST00000494623 SPDYE5A6NIY4 337 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 BANF1O75531 89 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 MICAL2O94851 1124 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 C22orf31O95567 290 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 VTNP04004 478 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 KDELR1P24390 212 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 PTPN7P35236 360 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 PTPN11Q06124 597 aaPredicted RBP11.78□□□□□ -0.52
CHMP3-209ENST00000494623 MYO1EQ12965 1108 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 MORF4L2Q15014 288 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 ZKSCAN8Q15776 578 aaPredicted RBP11.78□□□□□ -0.52
CHMP3-209ENST00000494623 RNASEH2BQ5TBB1 312 aaKnown RBP11.78□□□□□ -0.52
CHMP3-209ENST00000494623 SLC35B2Q8TB61 432 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 P3H4Q92791 437 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 OPTNQ96CV9 577 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 TMEM176AQ96HP8 235 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 KLC4Q9NSK0 619 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 PTPRFP10586 1907 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 M0QYV0 167 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 GHRP10912 638 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 PHKA2P46019 1235 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 MNAT1P51948 309 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 GDF10P55107 478 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 GAD2Q05329 585 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 MTM1Q13496 603 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 ARHGEF18Q6ZSZ5 1173 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 CENPUQ71F23 418 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 TRPM8Q7Z2W7 1104 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 POLNQ7Z5Q5 900 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 RFX6Q8HWS3 928 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 MAML1Q92585 1016 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 TGS1Q96RS0 853 aaKnown RBP11.78□□□□□ -0.52
CHMP3-209ENST00000494623 AGAP1Q9UPQ3 857 aa11.78□□□□□ -0.52
CHMP3-209ENST00000494623 USP15Q9Y4E8 981 aaPredicted RBP11.78□□□□□ -0.52
CHMP3-209ENST00000494623 ALOX15BO15296 676 aa11.77□□□□□ -0.52
CHMP3-209ENST00000494623 RASSF9O75901 435 aa11.77□□□□□ -0.52
CHMP3-209ENST00000494623 ABHD2P08910 425 aa11.77□□□□□ -0.52
CHMP3-209ENST00000494623 KRT15P19012 456 aa11.77□□□□□ -0.52
CHMP3-209ENST00000494623 GCAP28676 217 aa11.77□□□□□ -0.52
CHMP3-209ENST00000494623 ZNF268Q14587 947 aaPredicted RBP11.77□□□□□ -0.52
CHMP3-209ENST00000494623 RSAD2Q8WXG1 361 aa11.77□□□□□ -0.52
CHMP3-209ENST00000494623 HPDLQ96IR7 371 aa11.77□□□□□ -0.52
CHMP3-209ENST00000494623 TTC25Q96NG3 672 aa11.77□□□□□ -0.52
CHMP3-209ENST00000494623 MROH8Q9H579 483 aa11.77□□□□□ -0.52
CHMP3-209ENST00000494623 PCDH9Q9HC56 1237 aa11.77□□□□□ -0.52
CHMP3-209ENST00000494623 ABCF3Q9NUQ8 709 aa11.77□□□□□ -0.52
CHMP3-209ENST00000494623 CILPO75339 1184 aa11.77□□□□□ -0.53
CHMP3-209ENST00000494623 RNF8O76064 485 aa11.77□□□□□ -0.53
CHMP3-209ENST00000494623 CYP2C8P10632 490 aa11.77□□□□□ -0.53
CHMP3-209ENST00000494623 MIPP30301 263 aa11.77□□□□□ -0.53
CHMP3-209ENST00000494623 CTCFP49711 727 aaPredicted RBP11.77□□□□□ -0.53
CHMP3-209ENST00000494623 MOGSQ13724 837 aa11.77□□□□□ -0.53
CHMP3-209ENST00000494623 PKN2Q16513 984 aaKnown RBP11.77□□□□□ -0.53
CHMP3-209ENST00000494623 SLC10A6Q3KNW5 377 aa11.77□□□□□ -0.53
CHMP3-209ENST00000494623 ZNF484Q5JVG2 852 aa11.77□□□□□ -0.53
CHMP3-209ENST00000494623 FAM182AQ5T1J6 154 aa11.77□□□□□ -0.53
CHMP3-209ENST00000494623 MAP1SQ66K74 1059 aaPredicted RBP11.77□□□□□ -0.53
CHMP3-209ENST00000494623 ARMCX2Q7L311 632 aa11.77□□□□□ -0.53
CHMP3-209ENST00000494623 PRCCQ92733 491 aaPredicted RBP11.77□□□□□ -0.53
CHMP3-209ENST00000494623 CDCA5Q96FF9 252 aa11.77□□□□□ -0.53
CHMP3-209ENST00000494623 ADPGKQ9BRR6 497 aa11.77□□□□□ -0.53
CHMP3-209ENST00000494623 CALN1Q9BXU9 219 aa11.77□□□□□ -0.53
CHMP3-209ENST00000494623 PDZD7Q9H5P4 517 aa11.77□□□□□ -0.53
CHMP3-209ENST00000494623 KIF9Q9HAQ2 790 aa11.77□□□□□ -0.53
CHMP3-209ENST00000494623 EURLQ9NYK6 297 aa11.77□□□□□ -0.53
CHMP3-209ENST00000494623 WDR35Q9P2L0 1181 aa11.77□□□□□ -0.53
CHMP3-209ENST00000494623 EVPLQ92817 2033 aa11.77□□□□□ -0.53
CHMP3-209ENST00000494623 LGALS2P05162 132 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms