RNA–Protein interactions for RNA: ENST00000492602.5

SEC13-219, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, human

TSL 3

Gene SEC13, Length 393 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEC13-219	ENST00000492602	B4GALNT3	Q6L9W6	998 aa		5.88	□□□□□ -1.47
SEC13-219	ENST00000492602	PPP1R18	Q6NYC8	613 aa		5.88	□□□□□ -1.47
SEC13-219	ENST00000492602	CWC27	Q6UX04	472 aa	Known RBP	5.88	□□□□□ -1.47
SEC13-219	ENST00000492602	RALYL	Q86SE5	291 aa	Known RBP	5.88	□□□□□ -1.47
SEC13-219	ENST00000492602	RAB11FIP4	Q86YS3	637 aa		5.88	□□□□□ -1.47
SEC13-219	ENST00000492602	TEX2	Q8IWB9	1127 aa		5.88	□□□□□ -1.47
SEC13-219	ENST00000492602	SRRM1	Q8IYB3	904 aa	Known RBP	5.88	□□□□□ -1.47
SEC13-219	ENST00000492602	TTC9B	Q8N6N2	239 aa		5.88	□□□□□ -1.47
SEC13-219	ENST00000492602	KRI1	Q8N9T8	703 aa	Known RBP	5.88	□□□□□ -1.47
SEC13-219	ENST00000492602	ATAD1	Q8NBU5	361 aa		5.88	□□□□□ -1.47
SEC13-219	ENST00000492602	APPL2	Q8NEU8	664 aa		5.88	□□□□□ -1.47
SEC13-219	ENST00000492602	BEST2	Q8NFU1	509 aa		5.88	□□□□□ -1.47
SEC13-219	ENST00000492602	RDM1	Q8NG50	284 aa		5.88	□□□□□ -1.47
SEC13-219	ENST00000492602	DNASE2B	Q8WZ79	361 aa		5.88	□□□□□ -1.47
SEC13-219	ENST00000492602	DDX12P	Q92771	950 aa		5.88	□□□□□ -1.47
SEC13-219	ENST00000492602	RILPL2	Q969X0	211 aa		5.88	□□□□□ -1.47
SEC13-219	ENST00000492602	LENG9	Q96B70	501 aa		5.88	□□□□□ -1.47
SEC13-219	ENST00000492602	CNDP2	Q96KP4	475 aa	Known RBP	5.88	□□□□□ -1.47
SEC13-219	ENST00000492602	YTHDC1	Q96MU7	727 aa	Known RBP	5.88	□□□□□ -1.47
SEC13-219	ENST00000492602	PPP1R10	Q96QC0	940 aa	Known RBP	5.88	□□□□□ -1.47
SEC13-219	ENST00000492602	MTR	Q99707	1265 aa		5.88	□□□□□ -1.47
SEC13-219	ENST00000492602	DSCC1	Q9BVC3	393 aa		5.88	□□□□□ -1.47
SEC13-219	ENST00000492602	LNPK	Q9C0E8	428 aa		5.88	□□□□□ -1.47
SEC13-219	ENST00000492602	GLT8D2	Q9H1C3	349 aa		5.88	□□□□□ -1.47
SEC13-219	ENST00000492602	LINC00597	Q9H2U6	94 aa		5.88	□□□□□ -1.47
SEC13-219	ENST00000492602	CLCA2	Q9UQC9	943 aa		5.88	□□□□□ -1.47
SEC13-219	ENST00000492602	SNX11	Q9Y5W9	270 aa		5.88	□□□□□ -1.47
SEC13-219	ENST00000492602	SPEN	Q96T58	3664 aa	Known RBP	5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	MTMR11	A4FU01	709 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	MYMK	A6NI61	221 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	HIP1	O00291	1037 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	PCDHGA12	O60330	932 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	KAT7	O95251	611 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	APOD	P05090	189 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	MPO	P05164	745 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	FAM87A	P0C7U9	286 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	SFTPC	P11686	197 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	NCAM1	P13591	858 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	HOXB2	P14652	356 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	SDS	P20132	328 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	DDX6	P26196	483 aa	Known RBP eCLIP	5.87	□□□□□ -1.47	3e-6	■□□□□ 8.8
SEC13-219	ENST00000492602	CIITA	P33076	1130 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	MCM4	P33991	863 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	WAS	P42768	502 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	SLC6A11	P48066	632 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	CSNK1E	P49674	416 aa	Known RBP	5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	ACADVL	P49748	655 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	FOSB	P53539	338 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	YWHAH	Q04917	246 aa	Predicted RBP	5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	FAM160A1	Q05DH4	1040 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	POU5F1B	Q06416	359 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	SOX4	Q06945	474 aa	Predicted RBP	5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	MESP2	Q0VG99	397 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	GPR17	Q13304	367 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	CAPS	Q13938	189 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	ZNF268	Q14587	947 aa	Predicted RBP	5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	ZNF77	Q15935	545 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	DCAF12L1	Q5VU92	463 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	ZNF787	Q6DD87	383 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	XKR5	Q6UX68	686 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	KDM7A	Q6ZMT4	941 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	NFXL1	Q6ZNB6	911 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	LSMEM2	Q8N112	164 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	ASAP3	Q8TDY4	903 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	IGDCC4	Q8TDY8	1250 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	GIPC2	Q8TF65	315 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	SLC5A5	Q92911	643 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	EXTL1	Q92935	676 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	MTMR9	Q96QG7	549 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	PNKP	Q96T60	521 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	SEPT5	Q99719	369 aa	Predicted RBP	5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	GPR174	Q9BXC1	333 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	EPN3	Q9H201	632 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	WDR70	Q9NW82	654 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	PPME1	Q9Y570	386 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	TIMM13	Q9Y5L4	95 aa	Predicted RBP	5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	ARID2	Q68CP9	1835 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	NBAS	A2RRP1	2371 aa		5.87	□□□□□ -1.47
SEC13-219	ENST00000492602	KNL1	Q8NG31	2342 aa		5.86	□□□□□ -1.47
SEC13-219	ENST00000492602	SMIM28	A0A1B0GU29	152 aa		5.86	□□□□□ -1.47
SEC13-219	ENST00000492602	E2F8	A0AVK6	867 aa		5.86	□□□□□ -1.47
SEC13-219	ENST00000492602	CCDC69	A6NI79	296 aa		5.86	□□□□□ -1.47
SEC13-219	ENST00000492602	TTLL13P	A6NNM8	815 aa		5.86	□□□□□ -1.47
SEC13-219	ENST00000492602	BTBD18	B2RXH4	712 aa		5.86	□□□□□ -1.47
SEC13-219	ENST00000492602		H0Y8X5	98 aa		5.86	□□□□□ -1.47
SEC13-219	ENST00000492602	N4BP3	O15049	544 aa		5.86	□□□□□ -1.47
SEC13-219	ENST00000492602	PPFIA2	O75334	1257 aa		5.86	□□□□□ -1.47
SEC13-219	ENST00000492602	PSMD10	O75832	226 aa		5.86	□□□□□ -1.47
SEC13-219	ENST00000492602	IGHD	P01880	384 aa		5.86	□□□□□ -1.47
SEC13-219	ENST00000492602	CHRM1	P11229	460 aa	Predicted RBP	5.86	□□□□□ -1.47
SEC13-219	ENST00000492602	GRN	P28799	593 aa	Known RBP	5.86	□□□□□ -1.47
SEC13-219	ENST00000492602	CD6	P30203	668 aa		5.86	□□□□□ -1.47
SEC13-219	ENST00000492602	TNFSF9	P41273	254 aa		5.86	□□□□□ -1.47
SEC13-219	ENST00000492602	QARS	P47897	775 aa	Known RBP	5.86	□□□□□ -1.47
SEC13-219	ENST00000492602	CDR1	P51861	262 aa		5.86	□□□□□ -1.47
SEC13-219	ENST00000492602	INHBC	P55103	352 aa		5.86	□□□□□ -1.47
SEC13-219	ENST00000492602	ERVPABLB-1	P60509	514 aa		5.86	□□□□□ -1.47
SEC13-219	ENST00000492602	GABRE	P78334	506 aa		5.86	□□□□□ -1.47
SEC13-219	ENST00000492602	KDSR	Q06136	332 aa		5.86	□□□□□ -1.47
SEC13-219	ENST00000492602	USP4	Q13107	963 aa		5.86	□□□□□ -1.47

Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms