RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 NOL4O94818 638 aa16.85■□□□□ 0.29
SMPD4-220ENST00000491319 TNNC2P02585 160 aa16.85■□□□□ 0.29
SMPD4-220ENST00000491319 DDX6P26196 483 aaKnown RBP eCLIP16.85■□□□□ 0.29
SMPD4-220ENST00000491319 PCSK1P29120 753 aa16.85■□□□□ 0.29
SMPD4-220ENST00000491319 CASP1P29466 404 aa16.85■□□□□ 0.29
SMPD4-220ENST00000491319 LHX1P48742 406 aa16.85■□□□□ 0.29
SMPD4-220ENST00000491319 NRLP54845 237 aa16.85■□□□□ 0.29
SMPD4-220ENST00000491319 RPL10AP62906 217 aaKnown RBP16.85■□□□□ 0.29
SMPD4-220ENST00000491319 DMWDQ09019 674 aa16.85■□□□□ 0.29
SMPD4-220ENST00000491319 CCINQ13939 588 aa16.85■□□□□ 0.29
SMPD4-220ENST00000491319 LPAL2Q16609 132 aa16.85■□□□□ 0.29
SMPD4-220ENST00000491319 ITPRIPL2Q3MIP1 535 aa16.85■□□□□ 0.29
SMPD4-220ENST00000491319 DGKKQ5KSL6 1271 aa16.85■□□□□ 0.29
SMPD4-220ENST00000491319 FAM26FQ5R3K3 315 aa16.85■□□□□ 0.29
SMPD4-220ENST00000491319 TRIM68Q6AZZ1 485 aa16.85■□□□□ 0.29
SMPD4-220ENST00000491319 EPM2AIP1Q7L775 607 aaPredicted RBP16.85■□□□□ 0.29
SMPD4-220ENST00000491319 SPATA2LQ8IUW3 424 aaPredicted RBP16.85■□□□□ 0.29
SMPD4-220ENST00000491319 KBTBD7Q8WVZ9 684 aa16.85■□□□□ 0.29
SMPD4-220ENST00000491319 MRPS31Q92665 395 aaKnown RBP16.85■□□□□ 0.29
SMPD4-220ENST00000491319 HPDLQ96IR7 371 aa16.85■□□□□ 0.29
SMPD4-220ENST00000491319 FAM83CQ9BQN1 747 aa16.85■□□□□ 0.29
SMPD4-220ENST00000491319 HPS4Q9NQG7 708 aa16.85■□□□□ 0.29
SMPD4-220ENST00000491319 GKN1Q9NS71 199 aa16.85■□□□□ 0.29
SMPD4-220ENST00000491319 THG1LQ9NWX6 298 aaKnown RBP16.85■□□□□ 0.29
SMPD4-220ENST00000491319 MYOFQ9NZM1 2061 aa16.84■□□□□ 0.29
SMPD4-220ENST00000491319 SDK1Q7Z5N4 2213 aa16.84■□□□□ 0.29
SMPD4-220ENST00000491319 OTOL1A6NHN0 477 aaPredicted RBP16.84■□□□□ 0.29
SMPD4-220ENST00000491319 K7ESF4 209 aa16.84■□□□□ 0.29
SMPD4-220ENST00000491319 TGFB1I1O43294 461 aa16.84■□□□□ 0.29
SMPD4-220ENST00000491319 ATP2C2O75185 946 aa16.84■□□□□ 0.29
SMPD4-220ENST00000491319 HOXC13P31276 330 aa16.84■□□□□ 0.29
SMPD4-220ENST00000491319 PSMC1P62191 440 aaKnown RBP16.84■□□□□ 0.29
SMPD4-220ENST00000491319 AMPD3Q01432 767 aa16.84■□□□□ 0.29
SMPD4-220ENST00000491319 MYO1EQ12965 1108 aa16.84■□□□□ 0.29
SMPD4-220ENST00000491319 CFAP221Q4G0U5 840 aa16.84■□□□□ 0.29
SMPD4-220ENST00000491319 CNNM4Q6P4Q7 775 aa16.84■□□□□ 0.29
SMPD4-220ENST00000491319 MON1AQ86VX9 555 aa16.84■□□□□ 0.29
SMPD4-220ENST00000491319 WDR49Q8IV35 697 aa16.84■□□□□ 0.29
SMPD4-220ENST00000491319 NELFCDQ8IXH7 590 aa16.84■□□□□ 0.29
SMPD4-220ENST00000491319 IQUBQ8NA54 791 aa16.84■□□□□ 0.29
SMPD4-220ENST00000491319 SECISBP2LQ93073 1101 aaKnown RBP16.84■□□□□ 0.29
SMPD4-220ENST00000491319 SNX21Q969T3 373 aa16.84■□□□□ 0.29
SMPD4-220ENST00000491319 CHFRQ96EP1 664 aa16.84■□□□□ 0.29
SMPD4-220ENST00000491319 TRMT2BQ96GJ1 504 aaKnown RBP16.84■□□□□ 0.29
SMPD4-220ENST00000491319 SYT15Q9BQS2 421 aa16.84■□□□□ 0.29
SMPD4-220ENST00000491319 EBF3Q9H4W6 596 aa16.84■□□□□ 0.29
SMPD4-220ENST00000491319 KIF9Q9HAQ2 790 aa16.84■□□□□ 0.29
SMPD4-220ENST00000491319 TDP1Q9NUW8 608 aa16.84■□□□□ 0.29
SMPD4-220ENST00000491319 UXTQ9UBK9 157 aaPredicted RBP16.84■□□□□ 0.29
SMPD4-220ENST00000491319 R3HCC1Q9Y3T6 440 aaKnown RBP16.84■□□□□ 0.29
SMPD4-220ENST00000491319 CHURC1-FNTBB4DL54 471 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 CLIC2O15247 247 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 UBE4BO95155 1302 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 PAPSS2O95340 614 aaPredicted RBP16.83■□□□□ 0.28
SMPD4-220ENST00000491319 ARSAP15289 507 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 LMO2P25791 158 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 FNTBP49356 437 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 CYP2J2P51589 502 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 EHHADHQ08426 723 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 RUNX3Q13761 415 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 SURF1Q15526 300 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 SNRNP35Q16560 246 aaKnown RBP16.83■□□□□ 0.28
SMPD4-220ENST00000491319 DUOXA2Q1HG44 320 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 RSPO4Q2I0M5 234 aaPredicted RBP16.83■□□□□ 0.28
SMPD4-220ENST00000491319 FAM171BQ6P995 826 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 PRR23BQ6ZRT6 265 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 DGLUCYQ7Z3D6 616 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 LIMS2Q7Z4I7 341 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 SCN4BQ8IWT1 228 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 RDH13Q8NBN7 331 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 ZNF507Q8TCN5 953 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 SCFD1Q8WVM8 642 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 MYLPFQ96A32 169 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 FUBP3Q96I24 572 aaKnown RBP eCLIP16.83■□□□□ 0.28
SMPD4-220ENST00000491319 MYRFLQ96LU7 910 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 SLC22A12Q96S37 553 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 C7orf25Q9BPX7 421 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 BLZF1Q9H2G9 400 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 TRPC7Q9HCX4 862 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 CRTAC1Q9NQ79 661 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 AGPAT3Q9NRZ7 376 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 GMEB2Q9UKD1 530 aa16.83■□□□□ 0.28
SMPD4-220ENST00000491319 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.82■□□□□ 0.28
SMPD4-220ENST00000491319 POLR2DO15514 142 aaKnown RBP16.82■□□□□ 0.28
SMPD4-220ENST00000491319 F13A1P00488 732 aa16.82■□□□□ 0.28
SMPD4-220ENST00000491319 DLATP10515 647 aaKnown RBP16.82■□□□□ 0.28
SMPD4-220ENST00000491319 SRSF5Q13243 272 aaKnown RBP16.82■□□□□ 0.28
SMPD4-220ENST00000491319 PUM1Q14671 1186 aaKnown RBP eCLIP16.82■□□□□ 0.28
SMPD4-220ENST00000491319 HEATR6Q6AI08 1181 aaKnown RBP16.82■□□□□ 0.28
SMPD4-220ENST00000491319 PKN3Q6P5Z2 889 aa16.82■□□□□ 0.28
SMPD4-220ENST00000491319 UNC13DQ70J99 1090 aa16.82■□□□□ 0.28
SMPD4-220ENST00000491319 DPH6Q7L8W6 267 aa16.82■□□□□ 0.28
SMPD4-220ENST00000491319 KIAA1586Q9HCI6 787 aa16.82■□□□□ 0.28
SMPD4-220ENST00000491319 PARD6AQ9NPB6 346 aa16.82■□□□□ 0.28
SMPD4-220ENST00000491319 DLL3Q9NYJ7 618 aa16.82■□□□□ 0.28
SMPD4-220ENST00000491319 CDH9Q9ULB4 789 aa16.82■□□□□ 0.28
SMPD4-220ENST00000491319 RAB23Q9ULC3 237 aa16.82■□□□□ 0.28
SMPD4-220ENST00000491319 USP18Q9UMW8 372 aa16.82■□□□□ 0.28
SMPD4-220ENST00000491319 NME7Q9Y5B8 376 aa16.82■□□□□ 0.28
SMPD4-220ENST00000491319 MED19A0JLT2 244 aaPredicted RBP16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms