RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 MRI1Q9BV20 369 aa3.73□□□□□ -1.81
DEPDC1-204ENST00000489862 TMEM60Q9H2L4 133 aa3.73□□□□□ -1.81
DEPDC1-204ENST00000489862 GREM2Q9H772 168 aa3.73□□□□□ -1.81
DEPDC1-204ENST00000489862 RBM12Q9NTZ6 932 aaKnown RBP3.73□□□□□ -1.81
DEPDC1-204ENST00000489862 PDP2Q9P2J9 529 aa3.73□□□□□ -1.81
DEPDC1-204ENST00000489862 GJD2Q9UKL4 321 aa3.73□□□□□ -1.81
DEPDC1-204ENST00000489862 TPCN1Q9ULQ1 816 aa3.73□□□□□ -1.81
DEPDC1-204ENST00000489862 ATP11BQ9Y2G3 1177 aa3.73□□□□□ -1.81
DEPDC1-204ENST00000489862 TOPBP1Q92547 1522 aa3.73□□□□□ -1.81
DEPDC1-204ENST00000489862 CUX1P39880 1505 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 ZNF608Q9ULD9 1512 aaPredicted RBP3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 A0A1W2PRQ8 180 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 MARCH11A6NNE9 402 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 CFIP05156 583 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 HLA-DOAP06340 250 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 MTHFD2P13995 350 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 PDCP20941 246 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 FPR1P21462 350 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 AKAP5P24588 427 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 PLA2G5P39877 138 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 CLK3P49761 638 aaKnown RBP3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 TBX2Q13207 712 aaPredicted RBP3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 SP140Q13342 867 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 FAM209BQ5JX69 171 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 INTS11Q5TA45 600 aaKnown RBP3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 VPS53Q5VIR6 699 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 RETSATQ6NUM9 610 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 GALNT5Q7Z7M9 940 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 LIX1LQ8IVB5 337 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 RHOT2Q8IXI1 618 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 CAMKK1Q8N5S9 505 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 SPATA5Q8NB90 893 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 ACRBPQ8NEB7 543 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 ASB12Q8WXK4 309 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 LINC00476Q8WZB0 136 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 HOXB13Q92826 284 aaPredicted RBP3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 CAVIN3Q969G5 261 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 C18orf8Q96DM3 657 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 MYOCQ99972 504 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 ZSWIM1Q9BR11 485 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 ADGRE3Q9BY15 652 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 SLC29A3Q9BZD2 475 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 SENP6Q9GZR1 1112 aaPredicted RBP3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 PRKRIP1Q9H875 184 aaPredicted RBP3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 CERS4Q9HA82 394 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 KMT5AQ9NQR1 393 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 DNAJC28Q9NX36 388 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 RNF181Q9P0P0 153 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 SIK3Q9Y2K2 1263 aa3.72□□□□□ -1.81
DEPDC1-204ENST00000489862 CCDC78A2IDD5 438 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 FAM227AF5H4B4 570 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 F8W8V4 182 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 EIF3FO00303 357 aaPredicted RBP3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 NDUFS2O75306 463 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 PRSS23O95084 383 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 POLBP06746 335 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 HKR1P10072 659 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 EGR2P11161 476 aaPredicted RBP3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 ITGAMP11215 1152 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 HSD3B1P14060 373 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 GSPT1P15170 499 aaKnown RBP3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 AGXTP21549 392 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 SLC6A2P23975 617 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 EDNRBP24530 442 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 CNTFP26441 200 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 SMARCA1P28370 1054 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 GUCY1A2P33402 732 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 DDIT3P35638 169 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 MCAMP43121 646 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 ALDH1A3P47895 512 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 AVPR1BP47901 424 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 SEC24CP53992 1094 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 TNFAIP2Q03169 654 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 PPFIA1Q13136 1202 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 GRM1Q13255 1194 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 SEPT2Q15019 361 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 CCDC38Q502W7 563 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 KLHL22Q53GT1 634 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 WDR45BQ5MNZ6 344 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 RNF220Q5VTB9 566 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 B3GNTL1Q67FW5 361 aaPredicted RBP3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 FAM180AQ6UWF9 173 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 TMTC1Q8IUR5 882 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 MAPKAPK5Q8IW41 473 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 TMEM132CQ8N3T6 1108 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 PRR18Q8N4B5 295 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 PLBD2Q8NHP8 589 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 MVB12AQ96EY5 273 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 MAP3K14Q99558 947 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 ADI1Q9BV57 179 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 FAM204AQ9H8W3 233 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 GJB4Q9NTQ9 266 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 MRGBPQ9NV56 204 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 AJAP1Q9UKB5 411 aaPredicted RBP3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 ITGB1BP2Q9UKP3 347 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 LIMCH1Q9UPQ0 1083 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 RAD54L2Q9Y4B4 1467 aa3.71□□□□□ -1.82
DEPDC1-204ENST00000489862 CYSRT1A8MQ03 144 aa3.7□□□□□ -1.82
DEPDC1-204ENST00000489862 H3BML4 177 aa3.7□□□□□ -1.82
DEPDC1-204ENST00000489862 CDKL5O76039 1030 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms