RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 DENND1BQ6P3S1 775 aa15.02■□□□□ -0
CUX1-209ENST00000487284 RASGEF1CQ8N431 466 aa15.02■□□□□ -0
CUX1-209ENST00000487284 MMGT1Q8N4V1 131 aa15.02■□□□□ -0
CUX1-209ENST00000487284 SPATA4Q8NEY3 305 aa15.02■□□□□ -0
CUX1-209ENST00000487284 RSPH1Q8WYR4 309 aa15.02■□□□□ -0
CUX1-209ENST00000487284 CD101Q93033 1021 aa15.02■□□□□ -0
CUX1-209ENST00000487284 MS4A14Q96JA4 679 aa15.02■□□□□ -0
CUX1-209ENST00000487284 UROC1Q96N76 676 aa15.02■□□□□ -0
CUX1-209ENST00000487284 SELENOOQ9BVL4 669 aa15.02■□□□□ -0
CUX1-209ENST00000487284 NT5C1AQ9BXI3 368 aa15.02■□□□□ -0
CUX1-209ENST00000487284 ANKZF1Q9H8Y5 726 aa15.02■□□□□ -0
CUX1-209ENST00000487284 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.02■□□□□ -0
CUX1-209ENST00000487284 PRG3Q9Y2Y8 225 aaPredicted RBP15.02■□□□□ -0
CUX1-209ENST00000487284 SCINQ9Y6U3 715 aa15.02■□□□□ -0
CUX1-209ENST00000487284 KIAA1671Q9BY89 1806 aa15.02■□□□□ -0
CUX1-209ENST00000487284 PDE4DIPQ5VU43 2346 aa15.02□□□□□ -0.01
CUX1-209ENST00000487284 O00370 1275 aa15.02□□□□□ -0.01
CUX1-209ENST00000487284 ITGB1P05556 798 aa15.02□□□□□ -0.01
CUX1-209ENST00000487284 COMTP21964 271 aa15.02□□□□□ -0.01
CUX1-209ENST00000487284 OR1G1P47890 313 aa15.02□□□□□ -0.01
CUX1-209ENST00000487284 C2orf54Q08AI8 447 aa15.02□□□□□ -0.01
CUX1-209ENST00000487284 ORC1Q13415 861 aa15.02□□□□□ -0.01
CUX1-209ENST00000487284 CNGA2Q16280 664 aa15.02□□□□□ -0.01
CUX1-209ENST00000487284 SV2CQ496J9 727 aa15.02□□□□□ -0.01
CUX1-209ENST00000487284 C2CD6Q53TS8 623 aa15.02□□□□□ -0.01
CUX1-209ENST00000487284 SGO2Q562F6 1265 aa15.02□□□□□ -0.01
CUX1-209ENST00000487284 RASIP1Q5U651 963 aa15.02□□□□□ -0.01
CUX1-209ENST00000487284 LIMS2Q7Z4I7 341 aa15.02□□□□□ -0.01
CUX1-209ENST00000487284 ACTRT1Q8TDG2 376 aa15.02□□□□□ -0.01
CUX1-209ENST00000487284 HASPINQ8TF76 798 aa15.02□□□□□ -0.01
CUX1-209ENST00000487284 DDX27Q96GQ7 796 aaKnown RBP15.02□□□□□ -0.01
CUX1-209ENST00000487284 SLC9A7Q96T83 725 aa15.02□□□□□ -0.01
CUX1-209ENST00000487284 MRPL45Q9BRJ2 306 aaKnown RBP15.02□□□□□ -0.01
CUX1-209ENST00000487284 CARD9Q9H257 536 aa15.02□□□□□ -0.01
CUX1-209ENST00000487284 MTIF3Q9H2K0 278 aaKnown RBP15.02□□□□□ -0.01
CUX1-209ENST00000487284 MRPL47Q9HD33 250 aaKnown RBP15.02□□□□□ -0.01
CUX1-209ENST00000487284 SMARCAL1Q9NZC9 954 aa15.02□□□□□ -0.01
CUX1-209ENST00000487284 ANAPC7Q9UJX3 599 aa15.02□□□□□ -0.01
CUX1-209ENST00000487284 TCRBV5S1A1TA0A578 114 aa15.01□□□□□ -0.01
CUX1-209ENST00000487284 TMEM110-MUSTN1A8MSY1 372 aa15.01□□□□□ -0.01
CUX1-209ENST00000487284 KPNA7A9QM74 516 aa15.01□□□□□ -0.01
CUX1-209ENST00000487284 B3GAT3O94766 335 aa15.01□□□□□ -0.01
CUX1-209ENST00000487284 CTNNA2P26232 953 aa15.01□□□□□ -0.01
CUX1-209ENST00000487284 PBX3P40426 434 aa15.01□□□□□ -0.01
CUX1-209ENST00000487284 MAMLD1Q13495 774 aa15.01□□□□□ -0.01
CUX1-209ENST00000487284 BTG3Q14201 252 aaPredicted RBP15.01□□□□□ -0.01
CUX1-209ENST00000487284 STILQ15468 1287 aa15.01□□□□□ -0.01
CUX1-209ENST00000487284 SOWAHAQ2M3V2 549 aa15.01□□□□□ -0.01
CUX1-209ENST00000487284 DCAF12L1Q5VU92 463 aa15.01□□□□□ -0.01
CUX1-209ENST00000487284 LLGL2Q6P1M3 1020 aa15.01□□□□□ -0.01
CUX1-209ENST00000487284 FBXO38Q6PIJ6 1188 aa15.01□□□□□ -0.01
CUX1-209ENST00000487284 CD300LGQ6UXG3 332 aa15.01□□□□□ -0.01
CUX1-209ENST00000487284 UNC93AQ86WB7 457 aa15.01□□□□□ -0.01
CUX1-209ENST00000487284 HERC6Q8IVU3 1022 aa15.01□□□□□ -0.01
CUX1-209ENST00000487284 BTBD6Q96KE9 485 aa15.01□□□□□ -0.01
CUX1-209ENST00000487284 YME1L1Q96TA2 773 aa15.01□□□□□ -0.01
CUX1-209ENST00000487284 EPC1Q9H2F5 836 aa15.01□□□□□ -0.01
CUX1-209ENST00000487284 CWH43Q9H720 699 aa15.01□□□□□ -0.01
CUX1-209ENST00000487284 PARVAQ9NVD7 372 aa15.01□□□□□ -0.01
CUX1-209ENST00000487284 TTC7AQ9ULT0 858 aaPredicted RBP15.01□□□□□ -0.01
CUX1-209ENST00000487284 NME7Q9Y5B8 376 aa15.01□□□□□ -0.01
CUX1-209ENST00000487284 H0YGN5 161 aa15□□□□□ -0.01
CUX1-209ENST00000487284 I3L4J1 428 aa15□□□□□ -0.01
CUX1-209ENST00000487284 PGRMC1O00264 195 aaKnown RBP15□□□□□ -0.01
CUX1-209ENST00000487284 NRP1O14786 923 aa15□□□□□ -0.01
CUX1-209ENST00000487284 CEP104O60308 925 aa15□□□□□ -0.01
CUX1-209ENST00000487284 MICAL2O94851 1124 aa15□□□□□ -0.01
CUX1-209ENST00000487284 ATP2A2P16615 1042 aaKnown RBP15□□□□□ -0.01
CUX1-209ENST00000487284 BRCC3P46736 316 aa15□□□□□ -0.01
CUX1-209ENST00000487284 SLC11A1P49279 550 aa15□□□□□ -0.01
CUX1-209ENST00000487284 GSCP56915 257 aaPredicted RBP15□□□□□ -0.01
CUX1-209ENST00000487284 HTRA4P83105 476 aaPredicted RBP15□□□□□ -0.01
CUX1-209ENST00000487284 DCLRE1AQ6PJP8 1040 aa15□□□□□ -0.01
CUX1-209ENST00000487284 ERICH1Q86X53 443 aa15□□□□□ -0.01
CUX1-209ENST00000487284 CMTR2Q8IYT2 770 aaKnown RBP15□□□□□ -0.01
CUX1-209ENST00000487284 GBF1Q92538 1859 aa15□□□□□ -0.01
CUX1-209ENST00000487284 ALG3Q92685 438 aa15□□□□□ -0.01
CUX1-209ENST00000487284 HEXIM2Q96MH2 286 aaKnown RBP15□□□□□ -0.01
CUX1-209ENST00000487284 ZBED2Q9BTP6 218 aa15□□□□□ -0.01
CUX1-209ENST00000487284 PARD6BQ9BYG5 372 aa15□□□□□ -0.01
CUX1-209ENST00000487284 TRIM7Q9C029 511 aa15□□□□□ -0.01
CUX1-209ENST00000487284 TMEM59LQ9UK28 342 aa15□□□□□ -0.01
CUX1-209ENST00000487284 STRIP2Q9ULQ0 834 aa15□□□□□ -0.01
CUX1-209ENST00000487284 CCDC66A2RUB6 948 aa14.99□□□□□ -0.01
CUX1-209ENST00000487284 NT5C1B-RDH14C9J2C7 533 aa14.99□□□□□ -0.01
CUX1-209ENST00000487284 GALTP07902 379 aa14.99□□□□□ -0.01
CUX1-209ENST00000487284 RHOXF2BP0C7M4 288 aa14.99□□□□□ -0.01
CUX1-209ENST00000487284 CTNNA1P35221 906 aaKnown RBP14.99□□□□□ -0.01
CUX1-209ENST00000487284 SLC1A1P43005 524 aa14.99□□□□□ -0.01
CUX1-209ENST00000487284 AARSP49588 968 aaKnown RBP eCLIP14.99□□□□□ -0.01
CUX1-209ENST00000487284 PEX5P50542 639 aa14.99□□□□□ -0.01
CUX1-209ENST00000487284 SHHQ15465 462 aa14.99□□□□□ -0.01
CUX1-209ENST00000487284 PTPN20Q4JDL3 420 aa14.99□□□□□ -0.01
CUX1-209ENST00000487284 TIGD5Q53EQ6 642 aa14.99□□□□□ -0.01
CUX1-209ENST00000487284 LCLAT1Q6UWP7 414 aa14.99□□□□□ -0.01
CUX1-209ENST00000487284 UBL4BQ8N7F7 174 aa14.99□□□□□ -0.01
CUX1-209ENST00000487284 PHOSPHO2Q8TCD6 241 aa14.99□□□□□ -0.01
CUX1-209ENST00000487284 KBTBD7Q8WVZ9 684 aa14.99□□□□□ -0.01
CUX1-209ENST00000487284 SENP8Q96LD8 212 aa14.99□□□□□ -0.01
CUX1-209ENST00000487284 RNPC3Q96LT9 517 aaKnown RBP14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms